Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D9T18_RS14135 Genome accession   NZ_CP033065
Coordinates   3132617..3133846 (+) Length   409 a.a.
NCBI ID   WP_121638015.1    Uniprot ID   A0AAD0XD59
Organism   Pseudoalteromonas agarivorans strain Hao 2018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3127617..3138846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9T18_RS14110 (D9T18_14110) pdhR 3127954..3128703 (-) 750 WP_004588597.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  D9T18_RS14115 (D9T18_14115) ampE 3129107..3129958 (-) 852 WP_121638011.1 beta-lactamase regulator AmpE -
  D9T18_RS14120 (D9T18_14120) ampD 3129972..3130526 (-) 555 WP_121638012.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D9T18_RS14125 (D9T18_14125) nadC 3130741..3131586 (+) 846 WP_121638013.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D9T18_RS14130 (D9T18_14130) - 3132061..3132498 (+) 438 WP_121638014.1 pilin -
  D9T18_RS14135 (D9T18_14135) pilC 3132617..3133846 (+) 1230 WP_121638015.1 type II secretion system F family protein Machinery gene
  D9T18_RS14140 (D9T18_14140) pilD 3133995..3134885 (+) 891 WP_121638016.1 prepilin peptidase Machinery gene
  D9T18_RS14145 (D9T18_14145) coaE 3134887..3135507 (+) 621 WP_121638017.1 dephospho-CoA kinase -
  D9T18_RS14150 (D9T18_14150) pilB 3135654..3137330 (+) 1677 WP_029773362.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D9T18_RS14155 (D9T18_14155) yacG 3137378..3137608 (+) 231 WP_024031401.1 DNA gyrase inhibitor YacG -
  D9T18_RS14160 (D9T18_14160) - 3137676..3138167 (-) 492 WP_121638018.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44272.29 Da        Isoelectric Point: 9.7592

>NTDB_id=321125 D9T18_RS14135 WP_121638015.1 3132617..3133846(+) (pilC) [Pseudoalteromonas agarivorans strain Hao 2018]
MAKKQLDKGLDTFQWVGVSARGKKLEGELTGNSIALVKAQLRKQGITPSKVKRKAKPLFGIQSVQQITPKDIALLTRQIA
TMLMAGVPLIQAIEMIGSGSTNKSVGKLMETIGDEVKAGQPLSQALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPISVLVIAGIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIGISEFMQAYWWIILIAIVGFG
YAFKEAKLRSLKLRDATDRAILKLPIIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=321125 D9T18_RS14135 WP_121638015.1 3132617..3133846(+) (pilC) [Pseudoalteromonas agarivorans strain Hao 2018]
ATGGCAAAAAAACAACTAGATAAAGGCCTCGATACATTTCAATGGGTCGGTGTAAGCGCTCGTGGAAAAAAGCTTGAAGG
TGAGCTTACTGGTAATAGTATTGCATTAGTGAAAGCTCAACTTCGTAAACAAGGTATCACCCCCTCAAAAGTAAAACGCA
AAGCAAAACCTCTTTTTGGTATCCAAAGTGTTCAACAAATAACCCCTAAAGATATAGCTTTACTTACTCGACAAATAGCA
ACCATGCTTATGGCCGGCGTTCCATTAATTCAAGCCATTGAAATGATTGGCTCAGGTTCCACCAACAAAAGTGTTGGTAA
GTTAATGGAAACCATTGGCGATGAAGTTAAAGCAGGTCAACCTCTCTCACAAGCACTTAGAAAACACCCTCGCTATTTTG
ATGATTTGTATTGTGATTTAGTGGCATCGGGCGAGCAATCGGGTGCGCTTGATAAAATATTTGACCGGGTAGCTTTATAT
AAAGAGAAATCTGAAGCGCTTAAATCAAAAATTAAAAAAGCCATGTTTTACCCTATCTCAGTATTGGTTATCGCTGGCAT
TGTAACCTCTATTTTACTTATCTTTGTAGTTCCTCAGTTTCAAGATATATTTGCAGGGTTTGGCGCAGAGCTTCCTGCCT
TTACTTTATTTGTTATTGGTATTTCTGAATTTATGCAAGCCTACTGGTGGATAATTTTAATAGCCATTGTTGGCTTTGGT
TATGCATTTAAAGAAGCTAAGCTCAGAAGTTTAAAACTTAGAGATGCAACCGACAGAGCTATATTAAAACTGCCTATAAT
TGGCATGATTTTAAATAAAGCCGCTGTAGCCCGTTACGCTCGTACGCTTTCGACCACCTTTGCTGCAGGTGTACCACTTG
TTGATGCACTCGACTCAGCTGCTGGCGCATCAGGCAATGCAGTATATCGCTATGCTATTTTAGATATAAAAGCAGAGGTG
AGCTCGGGTAATCAAATGAACTGGGCGATGCGTAACTCTAAAATATTTCCAGACATGGTTATTCAAATGGTGGCCATTGG
TGAAGAATCTGGTTCGTTAGATGGCATGCTAGCCAAAGTAGCAACAATTTACGAACAAGAGGTTGATGATGCAGTTGATG
GCTTATCTAGCTTATTAGAGCCGCTTATTATGGCTGTGCTTGGTGTGCTCGTCGGTGGCTTAATTGTTGCCATGTACTTG
CCAATTTTCCAGTTAGGCTCTGTAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.103

100

0.621
  pilC Acinetobacter baumannii D1279779

56

97.8

0.548
  pilC Legionella pneumophila strain ERS1305867

56.281

97.311

0.548
  pilC Acinetobacter baylyi ADP1

55.25

97.8

0.54
  pilC Vibrio cholerae strain A1552

45.25

97.8

0.443
  pilG Neisseria meningitidis 44/76-A

44.898

95.844

0.43
  pilG Neisseria gonorrhoeae MS11

44.643

95.844

0.428
  pilC Vibrio campbellii strain DS40M4

42.857

99.267

0.425

Multiple sequence alignment