Detailed information NTG0321126

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D9T18_RS14140
• Genome accession: NZ_CP033065
• Coordinates: 3133995..3134885 (+)
• Length: 296 a.a.
• NCBI ID: WP_121638016.1
• Uniprot ID: -
• Organism: Pseudoalteromonas agarivorans strain Hao 2018
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3128995..3139885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9T18_RS14115 (D9T18_14115)	ampE	3129107..3129958 (-)	852	WP_121638011.1	beta-lactamase regulator AmpE	-
D9T18_RS14120 (D9T18_14120)	ampD	3129972..3130526 (-)	555	WP_121638012.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
D9T18_RS14125 (D9T18_14125)	nadC	3130741..3131586 (+)	846	WP_121638013.1	carboxylating nicotinate-nucleotide diphosphorylase	-
D9T18_RS14130 (D9T18_14130)	-	3132061..3132498 (+)	438	WP_121638014.1	pilin	-
D9T18_RS14135 (D9T18_14135)	pilC	3132617..3133846 (+)	1230	WP_121638015.1	type II secretion system F family protein	Machinery gene
D9T18_RS14140 (D9T18_14140)	pilD	3133995..3134885 (+)	891	WP_121638016.1	prepilin peptidase	Machinery gene
D9T18_RS14145 (D9T18_14145)	coaE	3134887..3135507 (+)	621	WP_121638017.1	dephospho-CoA kinase	-
D9T18_RS14150 (D9T18_14150)	pilB	3135654..3137330 (+)	1677	WP_029773362.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D9T18_RS14155 (D9T18_14155)	yacG	3137378..3137608 (+)	231	WP_024031401.1	DNA gyrase inhibitor YacG	-
D9T18_RS14160 (D9T18_14160)	-	3137676..3138167 (-)	492	WP_121638018.1	Spy/CpxP family protein refolding chaperone	-
D9T18_RS14165 (D9T18_14165)	-	3138343..3139032 (+)	690	WP_121638019.1	response regulator	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32536.76 Da
• Isoelectric Point: 7.0183

>NTDB_id=321126 D9T18_RS14140 WP_121638016.1 3133995..3134885(+) (pilD) [Pseudoalteromonas agarivorans strain Hao 2018]
MQSIIEVMQSQLWFYLTTVGLVSLCVGSFLNVVIYRLPLMMQREWQSECRLLLEDEITNKTTQASNSEPFNLVKPNSTCP
KCKTAIKPWQNIPIISWIVLKGKCANCSNPISARYPIVEAITALLSLVIAYSFGATEHALLYIFVTWILVALTFIDIDHM
LLPDQLTLPLVWLALIAAVMGITISPGDAIVGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTII
LLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITLLWGAQIQAAYFNLIGY

Nucleotide

• Length: 891 bp

>NTDB_id=321126 D9T18_RS14140 WP_121638016.1 3133995..3134885(+) (pilD) [Pseudoalteromonas agarivorans strain Hao 2018]
ATGCAAAGTATTATTGAAGTAATGCAAAGCCAATTGTGGTTTTATTTAACCACGGTTGGCTTAGTTAGTTTATGTGTAGG
CAGCTTTTTAAATGTAGTTATTTATCGATTGCCGTTAATGATGCAGCGAGAATGGCAAAGTGAATGTAGATTATTATTAG
AAGATGAAATAACAAACAAAACTACACAAGCTAGTAACAGTGAGCCATTTAATTTAGTAAAACCTAATTCTACCTGCCCT
AAATGCAAAACCGCGATTAAGCCTTGGCAGAATATACCTATTATTAGCTGGATTGTGCTTAAAGGTAAATGTGCTAATTG
TAGTAACCCAATATCAGCGCGTTACCCGATAGTTGAAGCTATTACCGCACTATTAAGTTTAGTTATTGCCTACAGCTTTG
GCGCTACTGAGCACGCCCTTTTATATATTTTTGTTACCTGGATTTTAGTGGCGCTCACTTTTATTGATATTGACCACATG
CTACTGCCCGATCAGCTCACTTTGCCTTTAGTATGGCTTGCGCTTATAGCCGCTGTAATGGGTATAACAATAAGCCCAGG
CGATGCGATAGTAGGGGCCGCATGCGGCTATTTAAGCCTGTGGAGTGTATTTTGGTTATTTAAGCTATTAACCGGCAAGG
AAGGCATGGGCTATGGCGATTTTAAGTTACTGGCCGTGTTTGGCGCACTGCTTGGGTGGCAGTCGCTATTAACCATTATT
TTGCTTTCAAGCGTGGTGGGCGCCATTATTGGTATTGCCCTTTTAAGTATTCAAGGTAAAGACAAAGCAACCCCCATTCC
ATTTGGCCCCTACTTAGCCATAGCGGGTTGGATAACACTGCTGTGGGGCGCTCAAATTCAAGCTGCGTATTTTAATTTAA
TTGGTTATTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (144-252)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.265	98.311	0.524
pilD	Vibrio cholerae strain A1552	52.759	97.973	0.517
pilD	Acinetobacter baumannii D1279779	52.069	97.973	0.51
pilD	Acinetobacter nosocomialis M2	51.712	98.649	0.51
pilD	Neisseria gonorrhoeae MS11	44.528	89.527	0.399