Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D9780_RS06560 Genome accession   NZ_CP033048
Coordinates   1429187..1429639 (+) Length   150 a.a.
NCBI ID   WP_121639668.1    Uniprot ID   -
Organism   Virgibacillus sp. Bac330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1423656..1440471 1429187..1429639 within 0


Gene organization within MGE regions


Location: 1423656..1440471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS06510 - 1423656..1423883 (-) 228 WP_073004555.1 phage holin -
  D9780_RS06515 - 1424041..1424487 (-) 447 WP_240458790.1 HXXEE domain-containing protein -
  D9780_RS06520 - 1425165..1425563 (-) 399 Protein_1295 sigma-70 family RNA polymerase sigma factor -
  D9780_RS06525 - 1425666..1426100 (-) 435 WP_121639662.1 ImmA/IrrE family metallo-endopeptidase -
  D9780_RS06530 - 1426123..1426572 (-) 450 WP_121639663.1 helix-turn-helix domain-containing protein -
  D9780_RS06535 - 1426728..1426964 (+) 237 WP_121639664.1 helix-turn-helix transcriptional regulator -
  D9780_RS06540 - 1427035..1427334 (-) 300 WP_162985815.1 helix-turn-helix domain-containing protein -
  D9780_RS06545 - 1427475..1427723 (+) 249 WP_121639666.1 helix-turn-helix domain-containing protein -
  D9780_RS06550 - 1427908..1428117 (+) 210 WP_121639518.1 hypothetical protein -
  D9780_RS06555 - 1428121..1429152 (+) 1032 WP_121639667.1 hypothetical protein -
  D9780_RS06560 ssbA 1429187..1429639 (+) 453 WP_121639668.1 single-stranded DNA-binding protein Machinery gene
  D9780_RS06565 - 1429667..1429945 (+) 279 WP_121639669.1 hypothetical protein -
  D9780_RS06570 - 1430008..1430436 (+) 429 WP_121639670.1 YopX family protein -
  D9780_RS06575 - 1430550..1430801 (+) 252 WP_121639523.1 hypothetical protein -
  D9780_RS21050 - 1430798..1430980 (+) 183 WP_162985816.1 hypothetical protein -
  D9780_RS06580 - 1431174..1431599 (+) 426 WP_121639524.1 hypothetical protein -
  D9780_RS06585 - 1431771..1431980 (+) 210 WP_121639671.1 hypothetical protein -
  D9780_RS06590 - 1432100..1432582 (+) 483 WP_121639672.1 ArpU family phage packaging/lysis transcriptional regulator -
  D9780_RS21055 - 1432870..1433844 (+) 975 WP_162985817.1 hypothetical protein -
  D9780_RS06600 - 1433962..1435179 (+) 1218 WP_121639674.1 LPXTG cell wall anchor domain-containing protein -
  D9780_RS06605 - 1435810..1438575 (+) 2766 WP_121639675.1 hypothetical protein -
  D9780_RS06610 - 1438633..1438992 (+) 360 WP_121639676.1 hypothetical protein -
  D9780_RS21060 - 1439046..1439198 (+) 153 WP_162985818.1 hypothetical protein -
  D9780_RS06615 - 1439248..1440471 (+) 1224 WP_121638963.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16795.55 Da        Isoelectric Point: 6.7220

>NTDB_id=320755 D9780_RS06560 WP_121639668.1 1429187..1429639(+) (ssbA) [Virgibacillus sp. Bac330]
MTINRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQQGNREADFINCVVWRRAAENLANYMHKGSMIGVDGRIQT
RRYEDKDKKTVFVTEVLAGSVQFIESKNSNSDRNTPNHHENASRGQENNFNSSFGSSGEAIDVTDDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=320755 D9780_RS06560 WP_121639668.1 1429187..1429639(+) (ssbA) [Virgibacillus sp. Bac330]
ATGACTATTAATCGTGTTGTGCTTGTAGGAAGGTTAACAAAGGATCCTGATTTACGCTATACACCAAATGGAGTGGCAGT
AGCTAATTTTACCTTAGCTGTTAACCGCCCATTTTCCAATCAACAGGGCAACCGTGAAGCTGATTTTATTAACTGCGTCG
TTTGGCGAAGAGCAGCGGAAAACCTGGCGAATTATATGCATAAAGGAAGCATGATTGGAGTAGATGGGCGCATTCAAACT
CGTCGATACGAAGATAAAGACAAAAAAACCGTTTTTGTTACTGAAGTATTAGCAGGAAGTGTTCAATTCATAGAAAGCAA
AAATAGCAATTCTGATAGAAATACACCAAATCACCATGAAAACGCCTCAAGAGGGCAAGAAAATAATTTTAACAGCTCGT
TTGGAAGTAGTGGGGAGGCGATAGATGTTACGGATGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.556

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

49.112

100

0.553
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.538

69.333

0.427
  ssbA Streptococcus mutans UA159

48.305

78.667

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

73.333

0.367
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.091

73.333

0.36
  ssbB/cilA Streptococcus pneumoniae Rx1

49.091

73.333

0.36
  ssbB/cilA Streptococcus pneumoniae D39

49.091

73.333

0.36
  ssbB/cilA Streptococcus pneumoniae R6

49.091

73.333

0.36
  ssbB/cilA Streptococcus mitis SK321

49.091

73.333

0.36

Multiple sequence alignment