Detailed information NTG0319001

Bioinformatically predicted

Overview

• Name: ctsE
• Type: Machinery gene
• Locus tag: ACRYA_RS00415
• Genome accession: NZ_CP032823
• Coordinates: 92435..93232 (+)
• Length: 265 a.a.
• NCBI ID: WP_228199754.1
• Uniprot ID: -
• Organism: Aliarcobacter cryaerophilus ATCC 43158
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 87435..98232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACRYA_RS00400 (ACRYA_0079)	-	88461..90383 (+)	1923	WP_105918147.1	site-specific integrase	-
ACRYA_RS00405 (ACRYA_0080)	-	90383..90820 (+)	438	WP_105918148.1	hypothetical protein	-
ACRYA_RS00410 (ACRYA_0081)	-	90828..92207 (+)	1380	WP_105918149.1	site-specific integrase	-
ACRYA_RS00415	ctsE	92435..93232 (+)	798	WP_228199754.1	GspE/PulE family protein	Machinery gene
ACRYA_RS00420 (ACRYA_0082)	-	93229..94413 (+)	1185	WP_105917556.1	type II secretion system F family protein	-
ACRYA_RS00425 (ACRYA_0083)	corA	94424..95374 (+)	951	WP_105917557.1	magnesium/cobalt transporter CorA	-
ACRYA_RS00430 (ACRYA_0084)	folE	95399..95971 (+)	573	WP_105917558.1	GTP cyclohydrolase I FolE	-
ACRYA_RS00435 (ACRYA_0085)	-	96034..96966 (-)	933	WP_105917559.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29861.53 Da
• Isoelectric Point: 5.0736

>NTDB_id=319001 ACRYA_RS00415 WP_228199754.1 92435..93232(+) (ctsE) [Aliarcobacter cryaerophilus ATCC 43158]
MPTIEAESIVLRVLDNKNIDKRLDDLGLSQNIYEDLKDILKITQGLILISGPTGSGKTTTLYSILKELNSDEKKIITVED
PIEYKIDSINQVPINNKVGLSFELVLKNILRQDPDIIFIGEIRDKFSLDIALQASLTGHLVLASIHSSSSVETITRLIDL
KADPFLISTTLKAVMAQRLVLAHCKSCENGCKECNFTKFYDRTSIAEILKIDEQISSLIFNKASYNELKEYLKDINFKTM
LDDGKQKVKEGLTTLEEVYKVVNYQ

Nucleotide

• Length: 798 bp

>NTDB_id=319001 ACRYA_RS00415 WP_228199754.1 92435..93232(+) (ctsE) [Aliarcobacter cryaerophilus ATCC 43158]
TTGCCAACAATTGAAGCAGAATCAATTGTTTTGCGAGTTTTAGATAATAAAAATATAGATAAAAGGTTGGATGATTTAGG
TCTTAGTCAAAATATTTATGAAGATTTAAAAGATATACTAAAAATCACTCAAGGTTTGATTTTGATTAGTGGACCAACAG
GAAGTGGAAAAACTACAACTCTTTATTCAATTTTAAAAGAGCTAAATAGTGATGAGAAAAAAATAATAACAGTTGAAGAT
CCTATTGAATACAAAATCGATAGCATAAACCAAGTTCCAATAAATAATAAAGTAGGGCTTAGTTTTGAGTTGGTTTTAAA
AAATATTTTAAGACAAGATCCAGATATTATTTTTATTGGTGAAATAAGAGATAAGTTTTCACTTGATATTGCTCTTCAAG
CATCATTAACAGGACATTTAGTACTTGCAAGTATTCATTCATCAAGTTCTGTTGAAACTATTACAAGATTGATAGATTTA
AAAGCTGACCCATTTTTAATCTCAACAACTCTTAAAGCAGTTATGGCCCAAAGATTGGTTTTGGCTCACTGTAAGAGTTG
TGAAAATGGTTGCAAAGAGTGTAATTTTACAAAATTTTATGATAGAACTTCTATTGCTGAAATTTTAAAAATTGATGAGC
AGATATCCTCTTTGATATTCAACAAAGCTAGCTATAATGAATTAAAAGAGTATTTAAAAGATATAAATTTCAAAACAATG
TTAGATGATGGAAAACAAAAAGTTAAAGAAGGTTTAACGACTTTAGAAGAGGTTTATAAAGTGGTAAATTACCAATGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (1-180)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsE	Campylobacter jejuni subsp. jejuni 81-176	46.237	100	0.487
pilF	Thermus thermophilus HB27	38.112	100	0.411
pilB	Glaesserella parasuis strain SC1401	39.114	100	0.4
pilB	Acinetobacter baumannii D1279779	36.177	100	0.4
pilB	Vibrio parahaemolyticus RIMD 2210633	36.332	100	0.396
pilB	Vibrio campbellii strain DS40M4	36.332	100	0.396
pilB	Acinetobacter baylyi ADP1	35.495	100	0.392
pilB	Legionella pneumophila strain ERS1305867	35.986	100	0.392
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	35.517	100	0.389
pilB	Haemophilus influenzae Rd KW20	38.491	100	0.385
pilB/pilB1	Synechocystis sp. PCC 6803	33.553	100	0.385
pilB	Vibrio cholerae strain A1552	34.483	100	0.377
pilB	Haemophilus influenzae 86-028NP	37.453	100	0.377
pilF	Neisseria gonorrhoeae MS11	33.333	100	0.374