Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D7032_RS02330 Genome accession   NZ_CP032664
Coordinates   499234..500502 (-) Length   422 a.a.
NCBI ID   WP_208192725.1    Uniprot ID   -
Organism   Shewanella algae strain HIDE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494234..505502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7032_RS02300 (D7032_02295) - 495896..496162 (-) 267 Protein_428 transposase -
  D7032_RS02305 (D7032_02300) mutT 496240..496638 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  D7032_RS02310 (D7032_02305) yacG 496638..496850 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  D7032_RS02315 (D7032_02310) zapD 496895..497635 (-) 741 WP_028779562.1 cell division protein ZapD -
  D7032_RS02320 (D7032_02315) coaE 497632..498243 (-) 612 WP_054744929.1 dephospho-CoA kinase -
  D7032_RS02325 (D7032_02320) pilD 498244..499158 (-) 915 WP_208192724.1 A24 family peptidase Machinery gene
  D7032_RS02330 (D7032_02325) pilC 499234..500502 (-) 1269 WP_208192725.1 type II secretion system F family protein Machinery gene
  D7032_RS02335 (D7032_02330) pilB 500659..502365 (-) 1707 WP_208192726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D7032_RS02340 (D7032_02335) - 502431..502847 (-) 417 WP_208192727.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D7032_RS02345 (D7032_02340) nadC 503715..504575 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D7032_RS02350 (D7032_02345) ampD 504734..505312 (+) 579 WP_186265262.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45942.14 Da        Isoelectric Point: 10.2919

>NTDB_id=317703 D7032_RS02330 WP_208192725.1 499234..500502(-) (pilC) [Shewanella algae strain HIDE]
MATATATAKNNKAKNKGAKPQPKIHTFTWKGQNRDGKLSSGELRGTSITEIKNLLKSQGINPKTVRKKSASLFGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNRVRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFAGFGAELPAFTQLIVNISRGLQST
WYLFLAAIVISVWLFVRAHRNSEHFRNRIDEMVLKIPLIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=317703 D7032_RS02330 WP_208192725.1 499234..500502(-) (pilC) [Shewanella algae strain HIDE]
ATGGCAACCGCAACGGCGACAGCTAAAAACAATAAAGCCAAGAATAAAGGCGCCAAGCCCCAGCCCAAGATCCACACCTT
TACCTGGAAGGGGCAGAATCGTGACGGCAAACTCAGCTCCGGCGAACTGCGTGGTACCAGCATCACAGAGATAAAAAACC
TGCTTAAGAGCCAGGGCATCAATCCCAAGACGGTACGTAAAAAATCCGCTTCTCTTTTCGGTGGTGATAAAAAAATCAAA
CCTATGGATATCGCGGTGATCACCCGTCAGATAGCTACTATGCTGGCTGCCGGCGTACCGCTGGTCACTTCTATCGAGCT
GATCGCTCGCGGCCATGAGAAAAACAGAGTGCGGGTGCTGCTTGGCACTGTATTGGCCGATGTCCAGGCCGGTATTCCAC
TCTCCGACGCCCTCCGCCCTCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAACATTCAGGC
TCCTTGGACGCCGTATTCGACCGTATCGCCACATACCGGGAAAAAGCTGAAGCCCTTAAGTCAAAAATTAAAAAGGCTAT
GTTCTACCCTGCCGCTGTAGTAGTGGTTGCTATAGCAGTTACTGTGCTGTTGCTTTTGTTTGTAGTACCTCAATTCGAAA
GTATATTTGCCGGCTTTGGCGCCGAGTTGCCTGCCTTTACCCAGTTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACC
TGGTATCTATTTCTAGCAGCCATAGTTATCAGTGTTTGGCTGTTTGTCCGTGCCCATCGTAACTCAGAACACTTTCGTAA
CCGTATCGATGAAATGGTACTGAAGATCCCTTTAATTGGTGAAATTCTCCATAAAGCTGCCATGGCCCGTTTTGCCCGCA
CCTTGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCTTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTC
TACCGCAAGGCGCTGTTGAATGTGCGTACCGAAGTGATGGCCGGAATGCAGATGAACGTGGCCATGCGCACTACCAAGCT
TTTTCCCGACATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCAGGCTCATTGGATAATATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTAGACGATGCCGTAGATGGGCTCTCCAGCCTAATAGAACCCATTATGATGGTAGTTATCGGC
ACCCTGGTTGGTGGCCTTATCGTCGGCATGTACCTGCCTATCTTCCAGATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.89

94.55

0.528
  pilC Acinetobacter baylyi ADP1

49.877

96.445

0.481
  pilC Legionella pneumophila strain ERS1305867

49.505

95.735

0.474
  pilC Acinetobacter baumannii D1279779

48.744

94.313

0.46
  pilC Vibrio cholerae strain A1552

46.384

95.024

0.441
  pilC Vibrio campbellii strain DS40M4

44.913

95.498

0.429
  pilG Neisseria meningitidis 44/76-A

41.928

98.341

0.412
  pilG Neisseria gonorrhoeae MS11

41.928

98.341

0.412

Multiple sequence alignment