Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D7I46_RS01530 Genome accession   NZ_CP032627
Coordinates   290468..290926 (+) Length   152 a.a.
NCBI ID   WP_120771268.1    Uniprot ID   A0A387BGA6
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 288526..298283 290468..290926 within 0


Gene organization within MGE regions


Location: 288526..298283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS01515 (D7I46_01515) - 288526..289296 (+) 771 WP_120771265.1 helix-turn-helix domain-containing protein -
  D7I46_RS01520 (D7I46_01520) - 289306..289638 (+) 333 WP_120771266.1 S24 family peptidase -
  D7I46_RS01525 (D7I46_01525) - 289675..290475 (+) 801 WP_120771267.1 hypothetical protein -
  D7I46_RS01530 (D7I46_01530) ssb 290468..290926 (+) 459 WP_120771268.1 single-stranded DNA-binding protein Machinery gene
  D7I46_RS01535 (D7I46_01535) - 291117..291752 (+) 636 WP_120771269.1 hypothetical protein -
  D7I46_RS13425 - 291825..292424 (+) 600 WP_205570821.1 hypothetical protein -
  D7I46_RS01545 (D7I46_01545) - 292429..292878 (+) 450 WP_120771270.1 hypothetical protein -
  D7I46_RS01550 (D7I46_01550) - 293095..293490 (+) 396 WP_120771271.1 hypothetical protein -
  D7I46_RS01555 (D7I46_01555) - 293492..294526 (+) 1035 WP_162930813.1 ATP-binding protein -
  D7I46_RS01560 (D7I46_01560) - 294537..294731 (+) 195 WP_120771273.1 hypothetical protein -
  D7I46_RS01565 (D7I46_01565) - 294764..295873 (+) 1110 WP_120771274.1 T4 RnlA family RNA ligase -
  D7I46_RS01570 (D7I46_01570) - 296239..296862 (+) 624 WP_120771275.1 DUF1642 domain-containing protein -
  D7I46_RS01575 (D7I46_01575) - 296859..297311 (+) 453 WP_120771276.1 DUF3850 domain-containing protein -
  D7I46_RS13215 - 297358..297531 (+) 174 WP_162930814.1 hypothetical protein -
  D7I46_RS13220 - 297535..297690 (+) 156 WP_162930774.1 hypothetical protein -
  D7I46_RS01580 (D7I46_01580) - 297705..298283 (+) 579 WP_120771277.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17342.40 Da        Isoelectric Point: 5.2707

>NTDB_id=317291 D7I46_RS01530 WP_120771268.1 290468..290926(+) (ssb) [Lactococcus allomyrinae strain 1JSPR-7]
MTNTVVLVGRLTREIELHYTPQNQAVATFSLAVNRPFKNANGEREADFIHCVIWRKQAENLANWTRKGTQIAVTGHIQTR
SYENSSGDRVYVTEVVVDNFQMLETRAIRENKAAEQISQQVEMISGSDNVGEKYNPFENREPMNIPDEALPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=317291 D7I46_RS01530 WP_120771268.1 290468..290926(+) (ssb) [Lactococcus allomyrinae strain 1JSPR-7]
ATGACTAATACTGTTGTGCTTGTGGGACGATTAACACGAGAGATTGAATTACATTATACACCTCAAAATCAAGCTGTAGC
GACTTTTTCTTTAGCAGTTAATCGACCGTTTAAGAATGCGAATGGGGAGCGTGAAGCTGATTTTATCCATTGTGTGATTT
GGCGCAAACAAGCTGAAAACTTAGCAAATTGGACGAGAAAAGGCACTCAAATTGCCGTTACAGGGCATATACAAACACGA
AGCTATGAAAATTCATCAGGAGACCGTGTTTATGTGACAGAAGTAGTCGTTGATAATTTTCAGATGCTAGAAACACGCGC
AATACGTGAGAACAAAGCAGCTGAGCAAATTTCACAACAAGTTGAGATGATTTCTGGTTCTGATAATGTAGGCGAAAAAT
ATAATCCCTTTGAGAATAGAGAACCAATGAATATTCCTGATGAAGCACTCCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BGA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.566
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.93

100

0.52
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.581

81.579

0.388
  ssbB/cilA Streptococcus mitis NCTC 12261

47.581

81.579

0.388
  ssbB/cilA Streptococcus pneumoniae Rx1

46.774

81.579

0.382
  ssbB/cilA Streptococcus pneumoniae R6

46.774

81.579

0.382
  ssbB/cilA Streptococcus mitis SK321

46.774

81.579

0.382
  ssbB/cilA Streptococcus pneumoniae D39

46.774

81.579

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

69.737

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.161

81.579

0.368

Multiple sequence alignment