Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | D5S10_RS04425 | Genome accession | NZ_CP032456 |
| Coordinates | 1007595..1008812 (-) | Length | 405 a.a. |
| NCBI ID | WP_016981137.1 | Uniprot ID | A0A7Z6UF05 |
| Organism | Pseudomonas savastanoi strain CAS03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1002595..1013812
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5S10_RS04410 (D5S10_04830) | yacG | 1005895..1006104 (-) | 210 | WP_002552020.1 | DNA gyrase inhibitor YacG | - |
| D5S10_RS04415 (D5S10_04835) | coaE | 1006101..1006724 (-) | 624 | WP_016981135.1 | dephospho-CoA kinase | - |
| D5S10_RS04420 (D5S10_04840) | pilD | 1006721..1007593 (-) | 873 | WP_016981136.1 | A24 family peptidase | Machinery gene |
| D5S10_RS04425 (D5S10_04845) | pilC | 1007595..1008812 (-) | 1218 | WP_016981137.1 | type II secretion system F family protein | Machinery gene |
| D5S10_RS04430 (D5S10_04850) | pilB | 1008815..1010509 (-) | 1695 | WP_031597287.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D5S10_RS04435 (D5S10_04855) | - | 1010735..1011130 (+) | 396 | WP_029240905.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| D5S10_RS04440 (D5S10_04860) | - | 1011400..1012596 (+) | 1197 | WP_371911670.1 | O-antigen ligase family protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44236.14 Da Isoelectric Point: 10.1095
>NTDB_id=315990 D5S10_RS04425 WP_016981137.1 1007595..1008812(-) (pilC) [Pseudomonas savastanoi strain CAS03]
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFISFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGSVV
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFISFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGSVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=315990 D5S10_RS04425 WP_016981137.1 1007595..1008812(-) (pilC) [Pseudomonas savastanoi strain CAS03]
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTAGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAGCTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCCG
TTTCGATCTTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATAGCATTCTTTTCTAGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCAGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACAGCTCTGCGACAAAAACCGGAATACTTCGATGACCTGTTTT
GCAATCTGGTCGATGCCGGAGAGCAAGCAGGTGCGCTCGAAAGTCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCCGTATTAATTGTCGCCTTTATCGTGTCAGGCAT
TTTGCTGATTAAGGTCGTACCGCAGTTTCAGTCTGTTTTCGCAGGGTTTAACGCGGAACTGCCAGCATTCACATTGATGG
TCATCGCGCTTTCGGAAGTCGTTCAGCAGTGGTGGCTGGCAATAGTGGCACTGTTTTTTATCAGCTTTTTCATGTTCAAG
CGGGCATACAAACAGTCTCAAAAGTTTCGTGACAGTCTCGACCGCTTTCTTCTGAAAGTCCCCATTATCGGACCGCTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCACGCACCCTTGCGACGACCTTCGCAGCAGGCGTCCCACTGGTCGAGGCACTGG
ACTCGGTCGCCGGAGCCACCGGTAACGTCGTGTTCAGGAACGCGGTCAATCAGGTCAAACAGGATGTTTCCACTGGCATG
CAACTGAATTTCTCGATGCGATCCACAGGCGTATTTCCAAGTCTGGCGATACAAATGACAGCCATCGGGGAAGAGTCCGG
TGCGCTTGACGCTATGCTCGATAAAGTCGCTACCTACTATGAAGAGGAAGTCGACAATATGGTCGACAACATGACCAGTC
TGATGGAGCCTATGATCATGGCGGTGCTGGGAGTGATCGTCGGCGGCCTTGTGATTGCCATGTACCTCCCCATATTCAAA
CTCGGAAGCGTTGTCTGA
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTAGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAGCTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCCG
TTTCGATCTTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATAGCATTCTTTTCTAGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCAGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACAGCTCTGCGACAAAAACCGGAATACTTCGATGACCTGTTTT
GCAATCTGGTCGATGCCGGAGAGCAAGCAGGTGCGCTCGAAAGTCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCCGTATTAATTGTCGCCTTTATCGTGTCAGGCAT
TTTGCTGATTAAGGTCGTACCGCAGTTTCAGTCTGTTTTCGCAGGGTTTAACGCGGAACTGCCAGCATTCACATTGATGG
TCATCGCGCTTTCGGAAGTCGTTCAGCAGTGGTGGCTGGCAATAGTGGCACTGTTTTTTATCAGCTTTTTCATGTTCAAG
CGGGCATACAAACAGTCTCAAAAGTTTCGTGACAGTCTCGACCGCTTTCTTCTGAAAGTCCCCATTATCGGACCGCTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCACGCACCCTTGCGACGACCTTCGCAGCAGGCGTCCCACTGGTCGAGGCACTGG
ACTCGGTCGCCGGAGCCACCGGTAACGTCGTGTTCAGGAACGCGGTCAATCAGGTCAAACAGGATGTTTCCACTGGCATG
CAACTGAATTTCTCGATGCGATCCACAGGCGTATTTCCAAGTCTGGCGATACAAATGACAGCCATCGGGGAAGAGTCCGG
TGCGCTTGACGCTATGCTCGATAAAGTCGCTACCTACTATGAAGAGGAAGTCGACAATATGGTCGACAACATGACCAGTC
TGATGGAGCCTATGATCATGGCGGTGCTGGGAGTGATCGTCGGCGGCCTTGTGATTGCCATGTACCTCCCCATATTCAAA
CTCGGAAGCGTTGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
73.58 |
100 |
0.736 |
| pilC | Acinetobacter baylyi ADP1 |
59.069 |
100 |
0.595 |
| pilC | Acinetobacter baumannii D1279779 |
58.663 |
99.753 |
0.585 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.273 |
97.778 |
0.511 |
| pilG | Neisseria gonorrhoeae MS11 |
42.432 |
99.506 |
0.422 |
| pilG | Neisseria meningitidis 44/76-A |
42.432 |
99.506 |
0.422 |
| pilC | Vibrio campbellii strain DS40M4 |
41.523 |
100 |
0.417 |
| pilC | Vibrio cholerae strain A1552 |
41.481 |
100 |
0.415 |
| pilC | Thermus thermophilus HB27 |
38.06 |
99.259 |
0.378 |