Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BEN74_RS09515 Genome accession   NZ_CP032279
Coordinates   1641509..1642738 (+) Length   409 a.a.
NCBI ID   WP_068912967.1    Uniprot ID   A0A3B7PVJ8
Organism   Acinetobacter sp. WCHAc010034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636509..1647738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS09470 (BEN74_09470) rimP 1636898..1637422 (-) 525 WP_068912959.1 ribosome maturation factor RimP -
  BEN74_RS09500 (BEN74_09500) secG 1638358..1638687 (-) 330 WP_068912961.1 preprotein translocase subunit SecG -
  BEN74_RS09505 (BEN74_09505) tpiA 1638701..1639492 (-) 792 WP_068912962.1 triose-phosphate isomerase -
  BEN74_RS09510 (BEN74_09510) pilB 1639768..1641477 (+) 1710 WP_068912964.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BEN74_RS09515 (BEN74_09515) pilC 1641509..1642738 (+) 1230 WP_068912967.1 type II secretion system F family protein Machinery gene
  BEN74_RS09520 (BEN74_09520) pilD 1642784..1643620 (+) 837 WP_068912969.1 prepilin peptidase Machinery gene
  BEN74_RS09525 (BEN74_09525) coaE 1643630..1644238 (+) 609 WP_068912971.1 dephospho-CoA kinase -
  BEN74_RS09530 (BEN74_09530) - 1644235..1645155 (-) 921 WP_068913015.1 DMT family transporter -
  BEN74_RS09535 (BEN74_09535) rlmB 1645184..1645933 (-) 750 WP_068912973.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BEN74_RS09540 (BEN74_09540) - 1646072..1646395 (-) 324 WP_068912975.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44920.28 Da        Isoelectric Point: 9.8242

>NTDB_id=314706 BEN74_RS09515 WP_068912967.1 1641509..1642738(+) (pilC) [Acinetobacter sp. WCHAc010034]
MAVKKAQMMPTFSYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKSIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAIVVTIILMVKVVPVFEGLFSSFGAELPAFTKMVVNMSNWFQSYWFIFIIAVAAVVA
CFLEAKKRSKKFRDFLDRAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVLKIREDVA
TGQQLQFAMRITDKFPSMAVQMVAIGEESGSLDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=314706 BEN74_RS09515 WP_068912967.1 1641509..1642738(+) (pilC) [Acinetobacter sp. WCHAc010034]
ATGGCTGTTAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGGATAGACCGCAAGGGAGCCAAACTTAAAGGGGA
ATTGCCTGCGCGTAATATGGCTTTGGCCAAGGTGACATTGCGCAAGCAGGGCATCACCATCAAGAGTATTCGGGAAAAGC
GCAAAAACATCCTCGAAGGCCTGATGAAAAAAAAGGTCTCAACCTTAGACATTACCATCTTCACCCGCCAGCTGGCCACC
ATGATGAAGGCCGGCGTGCCGCTGGTGCAGGGCTTTGAAATTGTTGCGGAAGGCCTGGAGAATCCAGCGATGCGCGAAGT
GGTGCTCGGCATCAAAGGCGAAGTGGAAGGCGGCAACACCTTTGCCGGTGCCCTGCGCAAGTATCCGCAATATTTTGACA
ACCTATTCTGCTCTTTGGTGGAATCCGGCGAACAGTCCGGCGCGCTGGAAACCATGCTGGATCGTGTCGCCATCTATAAA
GAAAAAAGCGAACTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATACCCGATATCTGTTATTGTAGTTGCCATTGTGGT
TACCATCATCCTGATGGTAAAAGTAGTGCCAGTTTTTGAAGGGCTTTTCAGCTCATTTGGAGCAGAACTGCCCGCTTTCA
CTAAAATGGTTGTAAATATGTCCAACTGGTTCCAAAGCTATTGGTTTATTTTCATCATTGCGGTTGCCGCCGTGGTTGCC
TGCTTTTTAGAGGCTAAAAAGCGCAGCAAAAAATTCCGCGACTTTCTGGACCGGGCAGCGCTGAAAGCGCCGATCTTTGG
CGATCTGGTATATAAAGCCATTATTGCGCGCTACAGCCGCACTCTTGCGACCACATTCGCTGCCGGCGTACCTTTGATTG
ACGCGCTTGAATCTACCGCAGGCGCAACCAATAATGTAGTTTACGAAACCGCGGTGCTTAAAATCCGCGAAGATGTCGCC
ACCGGCCAGCAGCTGCAGTTTGCCATGCGCATCACCGACAAATTTCCCTCCATGGCGGTGCAGATGGTCGCGATCGGCGA
AGAATCCGGCTCGCTGGACGCCATGCTGGATAAAGTGGCCACCCATTATGAAAATGAAGTGGACAATGCAGTCGACGGCT
TGACCTCGATGATGGAGCCTTTAATTATGGCCATATTAGGCGTGCTTGTCGGCGGCCTGGTGATTGCCATGTACCTGCCG
ATTTTCCAAATGGGTTCCGTTGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7PVJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

99.756

0.892
  pilC Acinetobacter baylyi ADP1

83.578

99.756

0.834
  pilC Pseudomonas stutzeri DSM 10701

60.247

99.022

0.597
  pilC Legionella pneumophila strain ERS1305867

53.827

99.022

0.533
  pilG Neisseria meningitidis 44/76-A

47.739

97.311

0.465
  pilG Neisseria gonorrhoeae MS11

47.739

97.311

0.465
  pilC Vibrio cholerae strain A1552

44.01

100

0.44
  pilC Vibrio campbellii strain DS40M4

42.015

99.511

0.418

Multiple sequence alignment