Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BEN74_RS09520 Genome accession   NZ_CP032279
Coordinates   1642784..1643620 (+) Length   278 a.a.
NCBI ID   WP_068912969.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1637784..1648620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS09500 (BEN74_09500) secG 1638358..1638687 (-) 330 WP_068912961.1 preprotein translocase subunit SecG -
  BEN74_RS09505 (BEN74_09505) tpiA 1638701..1639492 (-) 792 WP_068912962.1 triose-phosphate isomerase -
  BEN74_RS09510 (BEN74_09510) pilB 1639768..1641477 (+) 1710 WP_068912964.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BEN74_RS09515 (BEN74_09515) pilC 1641509..1642738 (+) 1230 WP_068912967.1 type II secretion system F family protein Machinery gene
  BEN74_RS09520 (BEN74_09520) pilD 1642784..1643620 (+) 837 WP_068912969.1 prepilin peptidase Machinery gene
  BEN74_RS09525 (BEN74_09525) coaE 1643630..1644238 (+) 609 WP_068912971.1 dephospho-CoA kinase -
  BEN74_RS09530 (BEN74_09530) - 1644235..1645155 (-) 921 WP_068913015.1 DMT family transporter -
  BEN74_RS09535 (BEN74_09535) rlmB 1645184..1645933 (-) 750 WP_068912973.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BEN74_RS09540 (BEN74_09540) - 1646072..1646395 (-) 324 WP_068912975.1 pyrimidine/purine nucleoside phosphorylase -
  BEN74_RS09545 (BEN74_09545) recN 1646850..1648511 (+) 1662 WP_068912977.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30714.81 Da        Isoelectric Point: 8.2779

>NTDB_id=314707 BEN74_RS09520 WP_068912969.1 1642784..1643620(+) (pilD) [Acinetobacter sp. WCHAc010034]
MQNPVALYIAIGLLSLCVGSFLNVVIYRTPKMMEQEWRTDCQLFLHPEQPVAEASKITLSKPNSACPECHSPIRWHQNIP
VISWLLLRGKCAACQNPISSRYPLIELLTAACSLTVVAVFGPSLQMLFGLILTWVLIALTFIDFDTQLLPDRYTLPLAAL
GLGINSFAVYTSPASAIWGYIIGFLCLWIVYYIFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSLVGAIIGII
LLKVRKENQPFAFGPYIAIAGWIAFLWGGQIMKIYLGQ

Nucleotide


Download         Length: 837 bp        

>NTDB_id=314707 BEN74_RS09520 WP_068912969.1 1642784..1643620(+) (pilD) [Acinetobacter sp. WCHAc010034]
ATGCAGAACCCGGTGGCGCTTTATATTGCTATCGGGCTACTCAGCCTGTGCGTCGGCAGTTTCCTGAATGTAGTCATTTA
CAGGACCCCTAAAATGATGGAGCAGGAATGGCGCACTGACTGCCAGCTGTTCCTCCACCCTGAACAGCCGGTAGCCGAGG
CCAGCAAGATTACCCTGAGCAAGCCGAATTCGGCCTGCCCGGAATGCCACAGCCCGATCCGCTGGCATCAGAACATTCCG
GTCATCAGCTGGCTCCTGCTCCGCGGCAAGTGCGCTGCATGCCAGAACCCGATCAGCAGCCGCTATCCGCTGATTGAATT
GCTGACCGCCGCCTGCTCTTTAACCGTTGTAGCGGTCTTTGGCCCAAGCCTGCAGATGCTGTTCGGATTAATCCTGACCT
GGGTGCTGATTGCCTTAACCTTTATAGATTTTGACACCCAGCTGCTGCCGGACCGCTATACCCTGCCCTTGGCGGCTTTA
GGCCTAGGCATCAACAGCTTCGCTGTTTACACCTCTCCGGCATCAGCCATTTGGGGCTATATTATCGGCTTCCTCTGCCT
GTGGATTGTCTATTACATTTTTAAAATCGTGACCGGCAAAGAAGGCATGGGCTATGGCGATTTCAAGCTTCTCGCCGCCT
TGGGCGCCTGGATGGGGCCGCTGATGCTGCCGCTGATTGTGCTGCTGTCCTCACTGGTCGGCGCCATCATCGGCATCATC
CTGCTGAAAGTCCGCAAGGAAAACCAGCCCTTCGCTTTCGGGCCATATATCGCCATTGCAGGCTGGATCGCTTTCCTCTG
GGGCGGGCAGATCATGAAAATTTACCTGGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(13-119)

Type IV leader peptidase family (Peptidase_A24)

(130-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.144

99.64

0.799
  pilD Acinetobacter baumannii D1279779

79.783

99.64

0.795
  pilD Vibrio campbellii strain DS40M4

54.275

96.763

0.525
  pilD Vibrio cholerae strain A1552

53.358

96.403

0.514
  pilD Neisseria gonorrhoeae MS11

50.19

94.604

0.475

Multiple sequence alignment