Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   D2E16_RS03690 Genome accession   NZ_CP032064
Coordinates   761743..762405 (+) Length   220 a.a.
NCBI ID   WP_192370121.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756743..767405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS03670 (D2E16_03785) - 756877..757662 (-) 786 WP_044767825.1 ABC transporter ATP-binding protein -
  D2E16_RS03675 (D2E16_03790) - 757814..759259 (-) 1446 WP_192369744.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  D2E16_RS03680 (D2E16_03795) - 759406..760152 (+) 747 WP_024415975.1 lysophospholipid acyltransferase family protein -
  D2E16_RS03685 (D2E16_03800) - 760188..761464 (-) 1277 Protein_681 transposase -
  D2E16_RS03690 (D2E16_03805) comEA/celA/cilE 761743..762405 (+) 663 WP_192370121.1 helix-hairpin-helix domain-containing protein Machinery gene
  D2E16_RS03695 (D2E16_03810) comEC/celB 762389..764626 (+) 2238 WP_192370118.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23437.25 Da        Isoelectric Point: 4.1788

>NTDB_id=313523 D2E16_RS03690 WP_192370121.1 761743..762405(+) (comEA/celA/cilE) [Streptococcus suis strain YSJ17]
MDKIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTEQTSSSSDLVEETSTEVSKEPSLLVVDVK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVTSTTASSAMSQDEKSTSLVN
LNTATETDLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=313523 D2E16_RS03690 WP_192370121.1 761743..762405(+) (comEA/celA/cilE) [Streptococcus suis strain YSJ17]
ATGGATAAGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGTCAACCAGCCAAGTCTGACCAGACAGGTCTGACAGATTTTCCACAGACCGAACAAA
CTTCTAGCAGCTCTGACTTGGTCGAGGAAACCAGTACAGAAGTAAGTAAGGAGCCCAGCCTGCTGGTCGTTGATGTCAAA
GGAGCAGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTCAATGATGCAGTTGAAGCAGCTGGTGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCAAGCAAGG
ATGAAAACATCTCGGTGGTGACTAGCACGACTGCCAGCTCTGCTATGTCCCAAGACGAAAAAAGCACCAGTCTGGTCAAT
CTGAATACGGCGACCGAGACTGACCTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACCATGGAAAGCATTC
GACCTTATGTCACGGTCGAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(157-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis SK321

47.534

100

0.482
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae D39

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae R6

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus mitis NCTC 12261

46.789

99.091

0.464
  comEA Streptococcus thermophilus LMD-9

59.873

71.364

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

40.625

100

0.414
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368

Multiple sequence alignment