Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   D2E16_RS03695 Genome accession   NZ_CP032064
Coordinates   762389..764626 (+) Length   745 a.a.
NCBI ID   WP_192370118.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757389..769626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS03675 (D2E16_03790) - 757814..759259 (-) 1446 WP_192369744.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  D2E16_RS03680 (D2E16_03795) - 759406..760152 (+) 747 WP_024415975.1 lysophospholipid acyltransferase family protein -
  D2E16_RS03685 (D2E16_03800) - 760188..761464 (-) 1277 Protein_681 transposase -
  D2E16_RS03690 (D2E16_03805) comEA/celA/cilE 761743..762405 (+) 663 WP_192370121.1 helix-hairpin-helix domain-containing protein Machinery gene
  D2E16_RS03695 (D2E16_03810) comEC/celB 762389..764626 (+) 2238 WP_192370118.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83678.49 Da        Isoelectric Point: 7.8197

>NTDB_id=313524 D2E16_RS03695 WP_192370118.1 762389..764626(+) (comEC/celB) [Streptococcus suis strain YSJ17]
MSRSSKLPCQPIHLAILAVAAYFAVHSFSLLTMGLLSLILAVFGVRQGKTVFLKTLPFLALCGLFFGCQKVQWERADQSA
PEQVTTVQVIPDTIEVNGDSLSFRGRADGQTYQVFYKLASQEEQTYFQKLTGLVQLEVEAEVSLPAGQRNFKGFDYQAYL
KTQGIYRTVKLTAIKNIVPVQSWNVFDWLSSWRRKALVYVKTNFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPLVKMTWGNGFFVFMEKIIVWVADLGLRPWILGKPSGLVLLLLLVCLFLLYDFHRKRNWLLGLSLVLALLFFITK
HPLENEVTVVDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGRIVVSPGSLTVPDFVATLKKINVPVHVVKVGDRLPIFDSYLEVLYPEGTGDGGNNDSVVLYGRLL
KTNFLFTGDLEQGELDLIEAYPNLPVDVLKAGHHGSKGSSYPEFLDHIGAKIALVSAGESNRYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWREWRIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=313524 D2E16_RS03695 WP_192370118.1 762389..764626(+) (comEC/celB) [Streptococcus suis strain YSJ17]
ATGTCACGGTCGAGTAAGCTCCCCTGCCAGCCCATTCACCTGGCAATCTTGGCGGTGGCGGCCTACTTTGCAGTCCACTC
TTTTTCCCTCTTGACAATGGGCCTGCTGAGTTTGATATTAGCTGTCTTTGGTGTTCGGCAAGGTAAGACGGTTTTCCTCA
AAACGCTGCCGTTTCTAGCCTTGTGTGGTCTGTTTTTCGGATGCCAGAAGGTCCAATGGGAGCGGGCAGATCAGTCAGCC
CCAGAGCAAGTGACGACTGTGCAGGTCATTCCAGATACCATTGAAGTCAACGGGGACAGTCTGTCCTTTCGTGGTCGGGC
TGACGGACAAACCTATCAAGTGTTCTACAAATTAGCCAGTCAGGAGGAGCAGACCTATTTTCAAAAGCTGACAGGTCTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAAGGCTTTGACTATCAGGCCTATCTG
AAAACACAGGGCATCTATCGGACAGTCAAGCTAACGGCGATTAAAAATATTGTCCCTGTCCAGTCTTGGAATGTTTTTGA
CTGGCTATCAAGCTGGCGGAGGAAAGCCTTGGTCTATGTCAAAACCAATTTTCCGGCTCCCATGAGTCACTACATGACAG
GGCTTTTGTTTGGGGAGCTGGATAGTGATTTCGACCAGATGAGTGACCTCTATTCTAGTCTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTGGGCTTTTTCATCGATAAGTTTCGCTGGATTTTACTGCGTTTGGGCTTGACCAAAGAAAC
GGTTGATAAATTACAAATTCCCTTTTCTCTTGTCTATGCGGGCTTAACTGGCTTTTCGGTGTCGGTGGTGCGGTCCTTGG
TCCAGAAAATTCTGGGTAATATGGGCTTGCGGAAGCTGGATAATTTTGCGGTGACAGTTTTTGTCTGTCTGTTGATACTG
CCCCGATTTTTACTGACAGCAGGAGGAGTGCTGACTTTTACCTATGCTTTCTTGCTGACGGTTTTTGATTTTGAGGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAAAGTCTCAGTATTTCACTTGGGATTTTGCCAGTGCTCATGACCTATTTCTATG
CCTTTCAGCCTTTGTCTATCCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTGCTTTTGCCAGGTTTGTCAGTT
ATTTTTCTCTTGTCACCTCTGGTCAAGATGACTTGGGGCAACGGATTTTTTGTCTTTATGGAGAAAATCATTGTCTGGGT
GGCTGATTTGGGATTGCGGCCTTGGATACTGGGCAAGCCGTCTGGTCTGGTCCTCTTACTTTTGCTGGTCTGCCTCTTCT
TGCTTTACGATTTCCACAGGAAGAGAAACTGGCTCCTAGGTCTAAGCCTGGTCCTCGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAGAACGAGGTGACGGTGGTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTGGGCGGTCGGGTCGATTTCGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTTCGCAGGCAAATGCAG
AGCGGACATTGATTCCCTATCTGCATAGTCGGGGTGTGGATAGGATTGATAGCTTGGTTCTGACCCATACCGATACGGAC
CATGTGGGCGATGTGCTGGAAGTGGCGAAGCAGGTGCAAATTGGTCGGATTGTCGTGTCGCCAGGAAGTCTGACGGTGCC
TGACTTTGTAGCAACTCTGAAAAAAATCAATGTGCCTGTCCATGTGGTCAAAGTGGGTGACCGATTGCCGATTTTTGACT
CCTATCTGGAAGTCCTCTATCCTGAAGGGACAGGCGATGGCGGTAATAATGATTCCGTTGTTCTCTACGGTCGCTTGCTG
AAAACTAATTTTCTTTTTACTGGGGACTTGGAGCAAGGGGAGTTGGACTTGATAGAAGCCTATCCCAACCTGCCTGTCGA
TGTCCTCAAAGCTGGTCACCACGGGTCTAAAGGTTCTTCCTATCCTGAATTTCTAGACCATATCGGAGCCAAGATTGCTC
TGGTATCAGCAGGAGAAAGTAACCGCTACAAGCATCCTCACCAAGAAACCTTGGACCGTTTTGACAGCCGGAATATCCAA
GTCTATCGAACTGATCAGCAGGGCGCCATTCGCTTTCGAGGTTGGAGGGAGTGGAGGATTGAAACGGTGAGGGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Competence protein (Competence)

(215-460)

Domain of unknown function (DUF4131) (DUF4131)

(30-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

54.435

99.866

0.544
  comEC/celB Streptococcus mitis NCTC 12261

53.333

98.658

0.526
  comEC/celB Streptococcus pneumoniae TIGR4

52.717

98.792

0.521
  comEC/celB Streptococcus pneumoniae Rx1

52.446

98.792

0.518
  comEC/celB Streptococcus pneumoniae D39

52.446

98.792

0.518
  comEC/celB Streptococcus pneumoniae R6

52.446

98.792

0.518
  comEC Lactococcus lactis subsp. cremoris KW2

49.067

100

0.494

Multiple sequence alignment