Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AhaeAN3_RS01370 Genome accession   NZ_CP031984
Coordinates   290580..292712 (+) Length   710 a.a.
NCBI ID   WP_171057143.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285580..297712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS01350 (AhaeAN3_01380) comM 287582..288640 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AhaeAN3_RS01355 (AhaeAN3_01385) pilN 288640..289284 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AhaeAN3_RS01360 (AhaeAN3_01390) pilO 289281..289991 (+) 711 WP_160126829.1 type 4a pilus biogenesis protein PilO Machinery gene
  AhaeAN3_RS01365 (AhaeAN3_01395) pilP 289991..290518 (+) 528 WP_004641321.1 pilus assembly protein PilP Machinery gene
  AhaeAN3_RS01370 (AhaeAN3_01400) pilQ 290580..292712 (+) 2133 WP_171057143.1 type IV pilus secretin PilQ family protein Machinery gene
  AhaeAN3_RS01375 (AhaeAN3_01405) aroK 292751..293293 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AhaeAN3_RS01380 (AhaeAN3_01410) aroB 293314..294399 (+) 1086 WP_004641316.1 3-dehydroquinate synthase -
  AhaeAN3_RS01385 (AhaeAN3_01415) - 294415..295287 (+) 873 WP_115736340.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77177.00 Da        Isoelectric Point: 7.2185

>NTDB_id=313116 AhaeAN3_RS01370 WP_171057143.1 290580..292712(+) (pilQ) [Acinetobacter haemolyticus strain AN3]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQSSI
PVATNEASSVEVAADEQRSRVIVNLKDAGAFTTRVEGNTFILKINSARPAIASPVSATARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKAGGVNRTANSDSLALE
SLLSPRGSAVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLV
GGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGFGEVISTPKVM
TADKQPAKIESGTKIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=313116 AhaeAN3_RS01370 WP_171057143.1 290580..292712(+) (pilQ) [Acinetobacter haemolyticus strain AN3]
ATGAATCGTGCATTCCGTCAATTTTCAATGGGTGCTGTCGCAATAGCAGTGATGCAGGTAGCATCAGCACAAGTGAACAT
GACCAACATTGTGCCAATGAGTTTGGCTGATCAGGGGACTGAAATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCGC
AGGCATATCAACTTGAACAACCCTCTCGTTTAATTTTGGATTTTGATAAAGCTAAACAAACCTTAAAGCAGAGCTCTATT
CCTGTTGCAACCAATGAAGCCAGCTCAGTAGAAGTCGCTGCGGATGAACAGCGTTCTCGTGTGATTGTGAATTTGAAAGA
TGCAGGCGCTTTTACCACACGTGTAGAAGGTAATACTTTTATTCTAAAAATTAATTCTGCGCGTCCTGCTATTGCGAGTC
CTGTATCTGCGACTGCCCGTCAAGTACAACAAGGGGTTTCAAATATTGGTTTCCAACGTGGCAATCAAGGTGAAGGTCTA
GTTGTGATTGATTTATTGGGTAGTAATACGCCAGTAGATGTACAACAGCAAGGGAGTAAAATCGTTGTGCGAACCATGGG
GAATAAAATTCCGACCCATTTAGCACGTCGTTTAAATACCAATGATTTCGCAACCCCTGTAGCAAGTATTGATGCCTATA
ATGATAAAGGTAATGGTGTGATTACCATTCAGTCTGCGGGTAGTTATGAATACATGGCTTATCAAGCTGAAAATAAACTG
ACGATTAGTTTAAAGCGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAAACTTATACTGGCAATAAGATTTCTTT
AGATTTCCAAGATATTGAAGTGCGTCGTGTGCTGCAGTTACTTGCTGATTTTACCAATATCAATATGGTGGCTGCTGATA
CGGTACAAGGGAATATTACTTTACGCCTAAAAGATGTACCTTGGGATCAGGCTTTGGATATTGTCTTAAAGACCAAAAAT
CTAGATAAGCGTCGTAATGGTAATGTGATATGGATCGCGCCAGTTTCAGAGTTGATTAAGGCTGAGGAAGAAGAGGCGAA
AGCCATTGCTCAAAGTGTAAAGCTTGCACCAATTCAATCTGAATATATCAAGCTGAGCTATGCAAAAGCAGCAGATATTT
TAAAACTGATCGAAGATTCTCGTGATGGTAAAGCTGGCGGAGTGAATCGTACAGCAAACTCTGATTCACTTGCTTTAGAA
AGCTTATTGAGTCCGCGAGGTAGTGCTGTCGCAGATGTGCGTACTAATACTTTGATCGTCAATGATACTGCCCAAAATAT
TGACAAGATCCGTAAGATGGTGGATCTGTTAGATGTTTCAGTTAAACAGGTGATGATCGAAGCCCGTATTGTTCGAGCGA
GTACCGACTTTACCCGAGAGATGGGAGTGAAGTGGGGAATCCTATCTCAAGGTGTTACCCGTAATAATGACCTGTTAGTT
GGTGGAAGTGACACTACGCTATGGAATTTGAGAGAGCCGAAAAAAGATAGCGAAACTGGTGGATGGAAATATGAAATCGA
ACGTCCCGATAATTTAAATGTAGATTTGGGTGCAGTTACTCCGGGTGCAAGTCGTATTGCTTTTGGCTTAATTAGCCTCT
CTGACTTTATGTTGGATTTAGAACTTTCAGCAGTACAGGCGGATGGTTTTGGTGAGGTTATTTCAACGCCTAAAGTGATG
ACTGCCGATAAGCAACCTGCAAAGATCGAGTCAGGAACCAAAATTCCTTATTCATCTTCGACGGGTGGGGGTGCAAATGC
GGTACCTAAAACTGAGTTCATTGATGCAACTTTAAGCCTAGATGTGACTCCAAGTATCACGCCCGATGGAAAAGTCATGA
TGAAACTTAACATTGCAAAAGATGCACCTGGCGCACCAACGCCAACGGGTCAATTAACCATTAGTAAGAATTCAATTGAT
ACCAATGTTTTGGTTGATAATGGTGAAACTGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATTAGCTCGCAAATTAA
AGTGCCATTTTTAGGTGATCTTCCGTATGTGGGGCGACTTTTCCGTCGTGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.586

100

0.761
  pilQ Acinetobacter baumannii strain A118

74.448

100

0.759
  comQ Acinetobacter baylyi ADP1

70.572

100

0.713
  pilQ Pseudomonas aeruginosa PAK

39.538

100

0.41
  pilQ Legionella pneumophila strain ERS1305867

38.872

94.93

0.369
  pilQ Legionella pneumophila strain Lp02

38.724

94.93

0.368

Multiple sequence alignment