Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AhaeAN3_RS01360 Genome accession   NZ_CP031984
Coordinates   289281..289991 (+) Length   236 a.a.
NCBI ID   WP_160126829.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284281..294991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS01345 (AhaeAN3_01375) ponA 284827..287418 (-) 2592 WP_026070395.1 penicillin-binding protein PBP1a -
  AhaeAN3_RS01350 (AhaeAN3_01380) comM 287582..288640 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AhaeAN3_RS01355 (AhaeAN3_01385) pilN 288640..289284 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AhaeAN3_RS01360 (AhaeAN3_01390) pilO 289281..289991 (+) 711 WP_160126829.1 type 4a pilus biogenesis protein PilO Machinery gene
  AhaeAN3_RS01365 (AhaeAN3_01395) pilP 289991..290518 (+) 528 WP_004641321.1 pilus assembly protein PilP Machinery gene
  AhaeAN3_RS01370 (AhaeAN3_01400) pilQ 290580..292712 (+) 2133 WP_171057143.1 type IV pilus secretin PilQ family protein Machinery gene
  AhaeAN3_RS01375 (AhaeAN3_01405) aroK 292751..293293 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AhaeAN3_RS01380 (AhaeAN3_01410) aroB 293314..294399 (+) 1086 WP_004641316.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26921.46 Da        Isoelectric Point: 4.8810

>NTDB_id=313114 AhaeAN3_RS01360 WP_160126829.1 289281..289991(+) (pilO) [Acinetobacter haemolyticus strain AN3]
MSQDELNDLNQEGAAVKKKKMTVEQFFQQFNTLDMNNYGSWPWSVKVTCWIFILLAVAALGYFVVIQKQLQTIANAEARE
QSLLNEFREKESKLRNLQQYQTQLQEMEANFNQQLEQLPKETEIPSLVEDMNLTGVNSGLKFKNIRLEKEVRQEFFIEQP
ISLEATGDYHAFGAFATGIAALPRIVTLHDFAVEAKEDTQKKSDIPVVHYTVKAKTYRYVGADDQVDSTAVSGGQR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=313114 AhaeAN3_RS01360 WP_160126829.1 289281..289991(+) (pilO) [Acinetobacter haemolyticus strain AN3]
ATGAGTCAAGATGAACTAAATGATCTCAATCAAGAAGGCGCAGCTGTAAAGAAAAAGAAAATGACAGTTGAGCAATTTTT
TCAGCAATTTAATACCTTAGATATGAACAACTATGGCAGTTGGCCATGGTCGGTAAAAGTGACGTGTTGGATTTTTATTT
TACTCGCTGTTGCGGCATTGGGTTATTTTGTTGTGATCCAAAAGCAGCTACAGACGATAGCTAATGCTGAAGCGCGTGAA
CAAAGTCTATTAAATGAGTTTAGAGAAAAGGAATCTAAATTACGCAACTTACAGCAATACCAAACTCAATTGCAAGAAAT
GGAAGCGAATTTTAATCAACAGCTTGAGCAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAGGATATGAACTTAA
CTGGGGTAAATTCAGGTCTGAAATTTAAAAACATTCGTTTAGAAAAAGAAGTTAGACAAGAGTTCTTCATCGAGCAACCA
ATTAGTTTGGAAGCAACAGGGGATTATCATGCTTTTGGTGCTTTCGCGACAGGTATTGCCGCTTTACCTCGTATCGTGAC
TTTGCATGACTTTGCTGTAGAGGCGAAAGAAGATACTCAGAAAAAGTCTGATATTCCTGTTGTTCATTATACGGTCAAAG
CAAAAACTTATCGTTATGTCGGTGCGGATGATCAGGTTGATAGCACTGCTGTTTCAGGGGGGCAACGCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

73.913

97.458

0.72
  comO Acinetobacter baylyi ADP1

71.429

97.881

0.699

Multiple sequence alignment