Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D1814_RS12775 Genome accession   NZ_CP031967
Coordinates   2961369..2962577 (-) Length   402 a.a.
NCBI ID   WP_118492832.1    Uniprot ID   -
Organism   Alteromonas sp. BL110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2956369..2967577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1814_RS12745 (D1814_12745) mutT 2956746..2957126 (+) 381 WP_118492820.1 8-oxo-dGTP diphosphatase MutT -
  D1814_RS12750 (D1814_12750) - 2957320..2958192 (-) 873 WP_118492822.1 aspartoacylase -
  D1814_RS12755 (D1814_12755) yacG 2958233..2958460 (-) 228 WP_118492824.1 DNA gyrase inhibitor YacG -
  D1814_RS12760 (D1814_12760) zapD 2958558..2959310 (-) 753 WP_118492826.1 cell division protein ZapD -
  D1814_RS12765 (D1814_12765) coaE 2959668..2960279 (-) 612 WP_118492828.1 dephospho-CoA kinase -
  D1814_RS12770 (D1814_12770) pilD 2960298..2961215 (-) 918 WP_118492830.1 A24 family peptidase Machinery gene
  D1814_RS12775 (D1814_12775) pilC 2961369..2962577 (-) 1209 WP_118492832.1 type II secretion system F family protein Machinery gene
  D1814_RS12780 (D1814_12780) - 2962653..2963102 (-) 450 WP_118492834.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D1814_RS12785 (D1814_12785) nadC 2963503..2964357 (-) 855 WP_118492836.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D1814_RS12790 (D1814_12790) - 2964390..2964908 (-) 519 WP_118492838.1 TIGR02281 family clan AA aspartic protease -
  D1814_RS12795 (D1814_12795) ampD 2965122..2965670 (+) 549 WP_118492841.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D1814_RS12800 (D1814_12800) ampE 2965704..2966609 (+) 906 WP_118492843.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43598.36 Da        Isoelectric Point: 9.6992

>NTDB_id=312944 D1814_RS12775 WP_118492832.1 2961369..2962577(-) (pilC) [Alteromonas sp. BL110]
MAKAATIFTWQGKDRKGQARKGEISATSLSEAKNLLRRQGISANKVKKLTKPLFGGAKKITPADISVISRQIATMLAAGV
TLIQSLEMIAQGHANPSMRKLLGEITEEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTVFVLGISRFVQDYGIFIAMGVAAAGFMFVRAH
RRSQKLRDSVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=312944 D1814_RS12775 WP_118492832.1 2961369..2962577(-) (pilC) [Alteromonas sp. BL110]
ATGGCAAAGGCTGCGACTATATTTACTTGGCAAGGCAAAGATCGCAAGGGACAAGCTCGGAAAGGCGAGATTTCTGCCAC
ATCACTTTCTGAAGCAAAGAACCTTTTGCGTCGCCAAGGTATTTCTGCCAATAAAGTAAAGAAACTAACTAAGCCCCTTT
TTGGTGGCGCAAAAAAAATAACTCCCGCTGACATTTCCGTTATCTCTCGTCAAATTGCTACTATGCTGGCCGCTGGCGTT
ACTTTAATTCAGTCTCTTGAAATGATCGCTCAGGGGCATGCGAACCCGTCAATGCGCAAACTGCTTGGCGAAATAACCGA
AGAAGTAAAATCGGGTAATCCACTTTCTTCAGCACTCAGAAAACATCCTCTTTACTTTGATGACCTGTATTGCGATTTGG
TTTACACAGGCGAACAGTCGGGTGCTCTTGAAACTATTTACGACCGTATAGCCACCTATAAAGAAAAAGCTGAAGCACTA
AAATCAAAGATCAAAAAAGCGATGTTTTACCCTATCGCAGTTTTGGTGGTTGCTTTTATTGTTACAACCATCCTACTTAT
TTTCGTTGTACCTCAATTTGAAGAAATATTCAGCAGTTTTGGCGCTGAACTGCCTGCATTTACTGTATTTGTGCTGGGAA
TTTCGCGATTTGTGCAAGACTACGGTATTTTTATCGCCATGGGAGTGGCAGCAGCAGGCTTTATGTTTGTGCGAGCGCAC
AGACGTAGCCAAAAGCTGCGCGATAGCGTAGACCGCAATATTTTAAAAATTCCGGTTATAGGTGAAATACTTAAAAAAGC
CAGTATTGCCCGCTTTACCCGTACCCTTGCAACCACCTTTGCTGCAGGTGTTCCACTAATAGGCGCCCTTGAATCTGCCG
CGGGTGCATCTGGCAATGCGGTTTATCGTGATGCCATTTTGTATATACGTAAAGAAGTAGCAGGCGGTATGCCTATGCAT
GTAGCCATGCGTGCTACCCAAGTATTCCCTGATATGGTCACGCAAATGATTGCCATTGGTGAAGAGTCGGGCGCGGTCGA
CGAAATGCTGAGCAAAATTGCCACCATTTACGAAGCAGAAGTTGACGACATGGTAGACGGTTTAACCAGTTTACTTGAAC
CTATGATCATGGCTGTACTAGGCGTAGTTATTGGCGGCTTAATTGTGGCCATGTACTTGCCTATATTCGAAATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.446

98.756

0.587
  pilC Legionella pneumophila strain ERS1305867

53.266

99.005

0.527
  pilC Acinetobacter baumannii D1279779

52.605

100

0.527
  pilC Acinetobacter baylyi ADP1

52.764

99.005

0.522
  pilG Neisseria gonorrhoeae MS11

44.802

100

0.45
  pilC Vibrio cholerae strain A1552

45.202

98.507

0.445
  pilG Neisseria meningitidis 44/76-A

44.03

100

0.44
  pilC Vibrio campbellii strain DS40M4

43.609

99.254

0.433
  pilC Thermus thermophilus HB27

36.658

99.751

0.366

Multiple sequence alignment