Detailed information NTG0312943

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D1814_RS12770
• Genome accession: NZ_CP031967
• Coordinates: 2960298..2961215 (-)
• Length: 305 a.a.
• NCBI ID: WP_118492830.1
• Uniprot ID: A0A3A9UGQ6
• Organism: Alteromonas sp. BL110
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2955298..2966215

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1814_RS12745 (D1814_12745)	mutT	2956746..2957126 (+)	381	WP_118492820.1	8-oxo-dGTP diphosphatase MutT	-
D1814_RS12750 (D1814_12750)	-	2957320..2958192 (-)	873	WP_118492822.1	aspartoacylase	-
D1814_RS12755 (D1814_12755)	yacG	2958233..2958460 (-)	228	WP_118492824.1	DNA gyrase inhibitor YacG	-
D1814_RS12760 (D1814_12760)	zapD	2958558..2959310 (-)	753	WP_118492826.1	cell division protein ZapD	-
D1814_RS12765 (D1814_12765)	coaE	2959668..2960279 (-)	612	WP_118492828.1	dephospho-CoA kinase	-
D1814_RS12770 (D1814_12770)	pilD	2960298..2961215 (-)	918	WP_118492830.1	A24 family peptidase	Machinery gene
D1814_RS12775 (D1814_12775)	pilC	2961369..2962577 (-)	1209	WP_118492832.1	type II secretion system F family protein	Machinery gene
D1814_RS12780 (D1814_12780)	-	2962653..2963102 (-)	450	WP_118492834.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
D1814_RS12785 (D1814_12785)	nadC	2963503..2964357 (-)	855	WP_118492836.1	carboxylating nicotinate-nucleotide diphosphorylase	-
D1814_RS12790 (D1814_12790)	-	2964390..2964908 (-)	519	WP_118492838.1	TIGR02281 family clan AA aspartic protease	-
D1814_RS12795 (D1814_12795)	ampD	2965122..2965670 (+)	549	WP_118492841.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33428.48 Da
• Isoelectric Point: 5.9039

>NTDB_id=312943 D1814_RS12770 WP_118492830.1 2960298..2961215(-) (pilD) [Alteromonas sp. BL110]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYESYFSDSASGKENDGATISADDKSPVSTDTF
NLVKPDSTCPSCGHKIRAWENIPVISYLFLKGKCAKCKVGISIRYPLVELFTAIACTFAAYQFGVTSQAVWVVIFTYVLV
ALLFIDLDKMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAF
TGWQGLPVIILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIIATYLGYVL

Nucleotide

• Length: 918 bp

>NTDB_id=312943 D1814_RS12770 WP_118492830.1 2960298..2961215(-) (pilD) [Alteromonas sp. BL110]
ATGGACGCCATAATAACACTTAGTCAGCTCTACCCTGCTGTATTTTATTCTCTTGTTTTCTTTGTAAGCTTAATGGTGGG
CAGCTTCCTAAATGTTGTGATTTACCGCCTGCCTATTATGATGGAGCGCAGCTGGCAACAAGAGTATGAAAGCTATTTTA
GTGATAGCGCAAGTGGCAAGGAAAACGACGGCGCCACTATATCTGCCGATGACAAGTCCCCCGTATCCACAGATACATTC
AACCTAGTAAAACCTGACAGTACCTGCCCAAGCTGCGGCCACAAAATTCGCGCGTGGGAAAATATCCCTGTTATCAGCTA
TCTATTTCTAAAGGGTAAGTGTGCTAAATGCAAAGTAGGTATTTCAATACGCTATCCACTTGTTGAACTTTTCACTGCTA
TAGCTTGTACCTTCGCTGCTTATCAGTTTGGCGTGACTTCACAGGCAGTGTGGGTGGTAATCTTCACCTATGTGCTTGTT
GCACTGCTGTTTATTGACTTAGATAAAATGTTGCTTCCCGACCAGTTAACACTGCCTCTGCTTTGGCTAGGTTTACTGCT
AAGTACACAAAACATATTCGTAGGCACTACCGATGCTATTATCGGTGCAGCGGCAGGCTATTTAAGCTTATGGTCTGTTT
ACTGGCTATTTAAGTTAGCAACAGGCAAGGAAGGCATGGGCTATGGCGATTTTAAACTGCTCGCGGCACTTGGGGCATTT
ACTGGCTGGCAAGGCCTACCTGTTATTATCTTGTTGTCTTCATTTGTGGGTGCCATTGCAGGCATACTCATTATGGTCAT
TCAGAATAAAGGCAAATCGTTAGCTATTCCTTTTGGACCCTATTTGGCTGTGGCAGGCTGGCTGACGTTGCTTTTTAAAG
ATGCGATCATCGCTACCTATCTCGGCTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

3D structure

• AlphaFold DB: A0A3A9UGQ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.349	97.705	0.511
pilD	Vibrio cholerae strain A1552	52.189	97.377	0.508
pilD	Acinetobacter nosocomialis M2	48.611	94.426	0.459
pilD	Acinetobacter baumannii D1279779	48.611	94.426	0.459
pilD	Neisseria gonorrhoeae MS11	47.636	90.164	0.43