Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0851_RS05640 Genome accession   NZ_CP031848
Coordinates   1208578..1209798 (+) Length   406 a.a.
NCBI ID   WP_117617743.1    Uniprot ID   A0A346RYY0
Organism   Marinobacter sp. Arc7-DN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203578..1214798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0851_RS05625 (D0851_05625) - 1203947..1205233 (-) 1287 WP_117617741.1 O-antigen ligase family protein -
  D0851_RS05630 (D0851_05630) - 1205878..1206369 (-) 492 WP_413773546.1 pilin -
  D0851_RS05635 (D0851_05635) pilB 1206860..1208575 (+) 1716 WP_117617742.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0851_RS05640 (D0851_05640) pilC 1208578..1209798 (+) 1221 WP_117617743.1 type II secretion system F family protein Machinery gene
  D0851_RS05645 (D0851_05645) pilD 1209969..1210844 (+) 876 WP_117617744.1 prepilin peptidase Machinery gene
  D0851_RS05650 (D0851_05650) coaE 1210994..1211593 (+) 600 WP_117617745.1 dephospho-CoA kinase -
  D0851_RS05655 (D0851_05655) - 1211565..1212680 (+) 1116 WP_227539458.1 hypothetical protein -
  D0851_RS05660 (D0851_05660) tsaA 1212887..1213633 (+) 747 WP_117617747.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44395.28 Da        Isoelectric Point: 9.3028

>NTDB_id=311844 D0851_RS05640 WP_117617743.1 1208578..1209798(+) (pilC) [Marinobacter sp. Arc7-DN-1]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVRKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDIASGTSFAGALRKHPKHFDDLYCNLVDSGEKAGALETMLDRIATYLEKT
ELLKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFESLFQGFGAELPVFTQMVVHLSEWMQSWWFVVLLGIIGTIFLFK
EAVRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALNSVAGATGNAVYRDAIDRIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=311844 D0851_RS05640 WP_117617743.1 1208578..1209798(+) (pilC) [Marinobacter sp. Arc7-DN-1]
ATGGCAGAGAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGGAAGGATCGGAAGGGTAACAAGTCCAAGGGTGAGCT
TACCGGGTCAAACCTTGCGCTTGTAAAAGCGCAACTCAGGAAGCAGGGCATTATTCCGGATAAGGTCAGAAAAAAACCCA
AACCGCTGTTTGGCGGCAGCAAGAAGATCACGCCGTTTGATATCGCGATGCTGACCCGGCAGCTGGCAACCATGATGAAA
GCCGGTGTGCCTCTGGTTCAGAGCTTTGACATTGTTGCGGATGGCCTGGAGAACAAGGGGCTTCAGGAACTGGTGATGAG
TATCCGGAATGATATTGCTTCGGGTACCAGTTTTGCCGGGGCTCTTCGTAAGCATCCCAAGCATTTTGACGACTTATATT
GCAACCTGGTGGATTCGGGTGAGAAGGCCGGTGCGCTCGAGACGATGCTCGACCGGATTGCCACCTATCTTGAAAAAACC
GAGCTTTTGAAGAAGAAAGTTAAAAAGGCAATGACCTACCCGATTGCCGTTGTCGTGGTGGCAATTATTGTTACGGCCAT
CCTTCTGGTGAAAGTTGTGCCTCAGTTTGAGAGCCTGTTCCAGGGTTTCGGCGCGGAGTTGCCGGTGTTTACTCAGATGG
TTGTGCACTTGTCTGAGTGGATGCAGAGTTGGTGGTTTGTCGTTCTCCTTGGAATCATCGGCACAATTTTTCTATTTAAA
GAGGCTGTTCGCCGGTCCCAGAAATTCTCGGACCTTGTCGATAAATACGTCCTGAAACTGCCTGTCGTCGGCGAAATCCT
CGACAAATCCGCCGTCGCAAAATTCGGCCGTGTTCTCTCTACCACCTTTGCTGCAGGTGTTCCCCTGGTGGATGCGCTTA
ATTCCGTGGCTGGCGCTACAGGTAATGCGGTTTACCGCGATGCCATCGACCGCATCAAGAACGATGTCTCCAGCGGTACC
CAGTTGCAGGCTTCGATGCGCCAGCAGGATGTTTTTCCGGTTATGGCGGTTCAGCTGACGGCGATCGGTGAGGAATCCGG
TAACCTGGATGAGATGCTGGCCAAGGTGGCGGAGCATTATGAGGCAGTGGTGGACGATATGGTTGATAACCTCACCGCGC
TGATGGAGCCGATGATTATGGCGGTTCTGGGTGTGCTGGTGGGTGGTTTGATTATTGCGATGTATCTGCCGATCTTCCAG
ATGGGGCAGGTTGTTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346RYY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.901

99.754

0.677
  pilC Acinetobacter baumannii D1279779

59.012

99.754

0.589
  pilC Acinetobacter baylyi ADP1

58.374

100

0.584
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.289

99.015

0.419
  pilG Neisseria meningitidis 44/76-A

41.935

99.261

0.416
  pilC Vibrio cholerae strain A1552

40.394

100

0.404
  pilC Vibrio campbellii strain DS40M4

40.049

100

0.401

Multiple sequence alignment