Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | D0N37_RS14465 | Genome accession | NZ_CP031759 |
| Coordinates | 3102959..3104182 (+) | Length | 407 a.a. |
| NCBI ID | WP_119231797.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas piscicida strain DE1-A | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3097959..3109182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0N37_RS14445 (D0N37_14445) | ampE | 3098985..3099836 (-) | 852 | WP_088531394.1 | beta-lactamase regulator AmpE | - |
| D0N37_RS14450 (D0N37_14450) | ampD | 3099843..3100385 (-) | 543 | WP_119231795.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D0N37_RS14455 (D0N37_14455) | nadC | 3100961..3101803 (+) | 843 | WP_119232292.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D0N37_RS25640 (D0N37_14460) | - | 3102459..3102908 (+) | 450 | WP_119231796.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| D0N37_RS14465 (D0N37_14465) | pilC | 3102959..3104182 (+) | 1224 | WP_119231797.1 | type II secretion system F family protein | Machinery gene |
| D0N37_RS14470 (D0N37_14470) | pilD | 3104316..3105194 (+) | 879 | WP_088531399.1 | prepilin peptidase | Machinery gene |
| D0N37_RS14475 (D0N37_14475) | coaE | 3105204..3105833 (+) | 630 | WP_119231798.1 | dephospho-CoA kinase | - |
| D0N37_RS14480 (D0N37_14480) | pilB | 3105943..3107619 (+) | 1677 | WP_117332834.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44629.61 Da Isoelectric Point: 9.5353
>NTDB_id=311022 D0N37_RS14465 WP_119231797.1 3102959..3104182(+) (pilC) [Pseudoalteromonas piscicida strain DE1-A]
MKDSSNQLETFQWVGVNNRGKKLEGEMTGQSIALVKAQLRKQGITPSKVKRKPKPLFGFTGTQKIKPVDIATTTRQIATM
LMAGVSLVQTLEMLTRGIKNKSLSKLVGHICDEVKAGQPLAKSLRAYPRYFDELYCDLVHSGEQSGALDTIFDRIALYKE
KTEALKSKIKKALFYPIAVVAVALIVTGILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWVFVLGLGLFGYT
YKEMLIRSAAVKHFNDRMILRIPVIGEILKKAAVARYARTLSTTFAAGVPLGDALDSAAGASGNIIYKNAIKEIKAEVNS
GNQMHWAMHNTKVFPDMVIQMVSIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMVVLGVLIGGLIIAMYLPI
FQLGSVI
MKDSSNQLETFQWVGVNNRGKKLEGEMTGQSIALVKAQLRKQGITPSKVKRKPKPLFGFTGTQKIKPVDIATTTRQIATM
LMAGVSLVQTLEMLTRGIKNKSLSKLVGHICDEVKAGQPLAKSLRAYPRYFDELYCDLVHSGEQSGALDTIFDRIALYKE
KTEALKSKIKKALFYPIAVVAVALIVTGILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWVFVLGLGLFGYT
YKEMLIRSAAVKHFNDRMILRIPVIGEILKKAAVARYARTLSTTFAAGVPLGDALDSAAGASGNIIYKNAIKEIKAEVNS
GNQMHWAMHNTKVFPDMVIQMVSIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMVVLGVLIGGLIIAMYLPI
FQLGSVI
Nucleotide
Download Length: 1224 bp
>NTDB_id=311022 D0N37_RS14465 WP_119231797.1 3102959..3104182(+) (pilC) [Pseudoalteromonas piscicida strain DE1-A]
TTGAAAGATTCCAGCAACCAATTAGAGACCTTTCAGTGGGTTGGTGTAAATAACCGAGGTAAAAAGCTCGAAGGCGAAAT
GACCGGGCAGAGCATTGCGTTGGTTAAAGCCCAACTCAGAAAGCAAGGCATTACCCCATCTAAAGTTAAACGCAAACCTA
AACCCCTTTTTGGTTTTACAGGCACTCAGAAAATAAAACCTGTCGATATAGCAACAACAACTCGTCAGATCGCAACTATG
CTAATGGCTGGCGTTTCACTTGTTCAAACGTTAGAAATGCTGACTCGCGGGATAAAGAATAAGAGCTTATCAAAGTTAGT
CGGCCATATTTGTGATGAAGTAAAAGCAGGCCAGCCTCTTGCTAAATCTCTAAGAGCATACCCAAGATATTTTGATGAGC
TCTATTGTGACCTTGTCCATTCAGGGGAACAGTCTGGTGCACTCGATACCATATTTGACCGCATCGCGCTTTATAAGGAG
AAGACTGAAGCACTTAAGTCTAAGATTAAAAAGGCGCTGTTCTACCCTATTGCCGTAGTGGCTGTAGCACTCATAGTTAC
TGGTATTTTGCTTATTTTCGTTGTACCTCAATTTCAAGATATCTTTGCAGGCTTTGGTGCTGAACTCCCCGCCTTTACGT
TGATGGTCATCGCGATTTCCGAATTTATGCAGGAATATTGGTGGGTATTTGTGCTTGGACTTGGCCTTTTTGGTTATACC
TATAAAGAAATGCTTATTCGCAGCGCTGCGGTAAAGCACTTTAATGACCGTATGATTTTACGTATTCCAGTGATTGGCGA
GATCCTTAAAAAAGCAGCAGTGGCGCGTTATGCTCGTACGCTTTCGACCACCTTTGCAGCGGGTGTGCCCCTTGGCGATG
CGCTAGATTCTGCCGCAGGAGCGTCGGGCAATATTATTTATAAAAATGCAATTAAAGAAATTAAAGCAGAGGTTAACTCG
GGTAACCAAATGCACTGGGCAATGCATAACACCAAAGTCTTCCCTGATATGGTGATACAAATGGTGTCTATTGGTGAAGA
ATCGGGCTCTCTAGATGGCATGCTGGCAAAGGTCGCTAACATTTATGAGCAAGAAGTCGATGATGCAGTAGATGGCCTTT
CTAGCCTATTAGAGCCATTAATTATGGTGGTACTCGGCGTACTGATCGGTGGCCTAATTATTGCCATGTACTTACCGATA
TTCCAACTAGGTTCTGTTATTTAA
TTGAAAGATTCCAGCAACCAATTAGAGACCTTTCAGTGGGTTGGTGTAAATAACCGAGGTAAAAAGCTCGAAGGCGAAAT
GACCGGGCAGAGCATTGCGTTGGTTAAAGCCCAACTCAGAAAGCAAGGCATTACCCCATCTAAAGTTAAACGCAAACCTA
AACCCCTTTTTGGTTTTACAGGCACTCAGAAAATAAAACCTGTCGATATAGCAACAACAACTCGTCAGATCGCAACTATG
CTAATGGCTGGCGTTTCACTTGTTCAAACGTTAGAAATGCTGACTCGCGGGATAAAGAATAAGAGCTTATCAAAGTTAGT
CGGCCATATTTGTGATGAAGTAAAAGCAGGCCAGCCTCTTGCTAAATCTCTAAGAGCATACCCAAGATATTTTGATGAGC
TCTATTGTGACCTTGTCCATTCAGGGGAACAGTCTGGTGCACTCGATACCATATTTGACCGCATCGCGCTTTATAAGGAG
AAGACTGAAGCACTTAAGTCTAAGATTAAAAAGGCGCTGTTCTACCCTATTGCCGTAGTGGCTGTAGCACTCATAGTTAC
TGGTATTTTGCTTATTTTCGTTGTACCTCAATTTCAAGATATCTTTGCAGGCTTTGGTGCTGAACTCCCCGCCTTTACGT
TGATGGTCATCGCGATTTCCGAATTTATGCAGGAATATTGGTGGGTATTTGTGCTTGGACTTGGCCTTTTTGGTTATACC
TATAAAGAAATGCTTATTCGCAGCGCTGCGGTAAAGCACTTTAATGACCGTATGATTTTACGTATTCCAGTGATTGGCGA
GATCCTTAAAAAAGCAGCAGTGGCGCGTTATGCTCGTACGCTTTCGACCACCTTTGCAGCGGGTGTGCCCCTTGGCGATG
CGCTAGATTCTGCCGCAGGAGCGTCGGGCAATATTATTTATAAAAATGCAATTAAAGAAATTAAAGCAGAGGTTAACTCG
GGTAACCAAATGCACTGGGCAATGCATAACACCAAAGTCTTCCCTGATATGGTGATACAAATGGTGTCTATTGGTGAAGA
ATCGGGCTCTCTAGATGGCATGCTGGCAAAGGTCGCTAACATTTATGAGCAAGAAGTCGATGATGCAGTAGATGGCCTTT
CTAGCCTATTAGAGCCATTAATTATGGTGGTACTCGGCGTACTGATCGGTGGCCTAATTATTGCCATGTACTTACCGATA
TTCCAACTAGGTTCTGTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
59.698 |
97.543 |
0.582 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.054 |
100 |
0.541 |
| pilC | Acinetobacter baumannii D1279779 |
51.365 |
99.017 |
0.509 |
| pilC | Acinetobacter baylyi ADP1 |
51.75 |
98.28 |
0.509 |
| pilC | Vibrio campbellii strain DS40M4 |
43.75 |
100 |
0.447 |
| pilC | Vibrio cholerae strain A1552 |
44.279 |
98.771 |
0.437 |
| pilG | Neisseria gonorrhoeae MS11 |
42.714 |
97.789 |
0.418 |
| pilG | Neisseria meningitidis 44/76-A |
43.152 |
95.086 |
0.41 |