Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0C16_RS11250 Genome accession   NZ_CP031728
Coordinates   2607391..2608674 (+) Length   427 a.a.
NCBI ID   WP_151032475.1    Uniprot ID   A0A5J6PBX3
Organism   Cellvibrio sp. KY-GH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2602391..2613674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS11235 (D0C16_11425) - 2602857..2604740 (-) 1884 WP_151032472.1 hypothetical protein -
  D0C16_RS11240 (D0C16_11430) - 2604894..2605385 (-) 492 WP_151032473.1 pilin -
  D0C16_RS11245 (D0C16_11435) pilB 2605662..2607386 (+) 1725 WP_151032474.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0C16_RS11250 (D0C16_11440) pilC 2607391..2608674 (+) 1284 WP_151032475.1 type II secretion system F family protein Machinery gene
  D0C16_RS11255 (D0C16_11445) pilD 2608677..2609573 (+) 897 WP_151032476.1 A24 family peptidase Machinery gene
  D0C16_RS11260 (D0C16_11450) coaE 2609576..2610211 (+) 636 WP_151032477.1 dephospho-CoA kinase -
  D0C16_RS11265 (D0C16_11455) yacG 2610224..2610442 (+) 219 WP_370458210.1 DNA gyrase inhibitor YacG -
  D0C16_RS11270 (D0C16_11460) - 2610444..2611397 (-) 954 WP_151032478.1 Nudix family hydrolase -
  D0C16_RS11275 (D0C16_11465) argJ 2611414..2612634 (-) 1221 WP_151032479.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 45774.98 Da        Isoelectric Point: 10.0264

>NTDB_id=310788 D0C16_RS11250 WP_151032475.1 2607391..2608674(+) (pilC) [Cellvibrio sp. KY-GH-1]
MALASTTKSSSASTSKAKQAIKPKAVPVTNTYVYKGVDKKGNKIQGEINGISPTIVKTLLAKQGITTRSISKKAKPLFGA
GGKSIKPADIAVFSRQMATMMKAGVPLVQAFEIVADGLENQNLRKMVLQIKDSVSAGGGFANALREHPKYFDDLFCNLVD
AGEQSGSLETMLDRIATYKEKTEALKAKIKKALTYPTAVIVVAIIVTGILLVKVVPQFASTFSGFGADLPAFTLFVLHLS
ELAQAYWFIILLGMAGGAFAFKELNRRSPKFSYLVDKYVLKLPIIGQIIYLSIMARFSRTLATTFAAGVPLIDALTSVAG
ATGNKIYTDAIIKVREDVSTGIQMNTALKARGTFPTLLIQMAAIGEESGALDTMLDKVAVYYEEAVDNMVDSLTSLLEPM
IMSVLGILVGGLMIAMYLPIFQLGSVV

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=310788 D0C16_RS11250 WP_151032475.1 2607391..2608674(+) (pilC) [Cellvibrio sp. KY-GH-1]
ATGGCACTAGCATCTACAACAAAATCATCCAGCGCTTCAACAAGCAAGGCCAAGCAAGCCATAAAGCCAAAGGCTGTGCC
GGTTACAAACACCTACGTCTACAAAGGCGTGGACAAGAAAGGCAATAAAATTCAGGGAGAGATCAACGGCATCAGCCCAA
CGATTGTCAAAACATTACTCGCCAAGCAAGGCATAACCACTCGCTCGATTTCAAAAAAGGCGAAGCCGCTGTTCGGCGCG
GGCGGAAAATCGATTAAACCCGCTGACATCGCCGTATTTTCTCGTCAAATGGCGACTATGATGAAGGCCGGGGTTCCACT
GGTACAAGCGTTTGAGATTGTCGCGGATGGCTTGGAGAATCAAAATCTTCGCAAAATGGTCTTGCAAATCAAAGACAGTG
TTTCAGCTGGTGGAGGTTTTGCCAACGCTCTTCGTGAGCACCCCAAATACTTCGATGATTTATTCTGCAACCTGGTAGAC
GCTGGTGAGCAATCAGGGTCACTAGAAACCATGCTGGACCGAATTGCCACATACAAAGAAAAAACTGAGGCTCTGAAAGC
AAAAATCAAAAAGGCACTTACTTACCCTACTGCGGTAATAGTGGTAGCGATTATAGTGACGGGTATTTTGCTAGTTAAGG
TCGTACCTCAATTTGCATCTACCTTTAGTGGGTTTGGCGCCGACTTACCAGCATTTACCTTGTTTGTCTTACACTTGTCC
GAACTCGCGCAAGCCTACTGGTTTATCATTCTTCTAGGGATGGCTGGTGGAGCGTTTGCCTTTAAAGAACTTAATCGTCG
TTCTCCAAAATTTTCATACTTAGTCGATAAATACGTACTTAAATTGCCAATTATTGGCCAAATTATTTATCTCTCTATCA
TGGCAAGGTTTTCGCGCACACTTGCGACAACATTCGCCGCCGGTGTCCCCCTAATCGATGCTCTCACGTCAGTAGCAGGT
GCTACGGGCAATAAAATTTATACTGACGCAATTATTAAGGTCAGAGAAGATGTGTCAACAGGCATCCAGATGAATACCGC
ACTGAAAGCGAGAGGGACGTTTCCTACGCTGTTAATCCAAATGGCAGCGATAGGAGAAGAATCCGGTGCGCTAGACACCA
TGCTGGATAAAGTAGCTGTTTATTATGAAGAGGCGGTAGACAACATGGTTGACAGCCTGACATCCCTGCTGGAACCAATG
ATTATGTCGGTGTTGGGGATCTTGGTTGGTGGACTGATGATTGCGATGTATCTGCCTATCTTCCAGCTTGGATCGGTTGT
ATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(297-419)

Type II secretion system (T2SS), protein F (T2SSF)

(93-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6PBX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.071

96.253

0.588
  pilC Acinetobacter baylyi ADP1

60.391

95.785

0.578
  pilC Acinetobacter baumannii D1279779

60.302

93.208

0.562
  pilC Legionella pneumophila strain ERS1305867

56.683

94.614

0.536
  pilC Vibrio cholerae strain A1552

42.079

94.614

0.398
  pilG Neisseria gonorrhoeae MS11

42.065

92.974

0.391
  pilG Neisseria meningitidis 44/76-A

42.065

92.974

0.391
  pilC Vibrio campbellii strain DS40M4

40.399

93.911

0.379

Multiple sequence alignment