Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   D0C16_RS11255 Genome accession   NZ_CP031728
Coordinates   2608677..2609573 (+) Length   298 a.a.
NCBI ID   WP_151032476.1    Uniprot ID   A0A5J6P790
Organism   Cellvibrio sp. KY-GH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2603677..2614573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS11240 (D0C16_11430) - 2604894..2605385 (-) 492 WP_151032473.1 pilin -
  D0C16_RS11245 (D0C16_11435) pilB 2605662..2607386 (+) 1725 WP_151032474.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0C16_RS11250 (D0C16_11440) pilC 2607391..2608674 (+) 1284 WP_151032475.1 type II secretion system F family protein Machinery gene
  D0C16_RS11255 (D0C16_11445) pilD 2608677..2609573 (+) 897 WP_151032476.1 A24 family peptidase Machinery gene
  D0C16_RS11260 (D0C16_11450) coaE 2609576..2610211 (+) 636 WP_151032477.1 dephospho-CoA kinase -
  D0C16_RS11265 (D0C16_11455) yacG 2610224..2610442 (+) 219 WP_370458210.1 DNA gyrase inhibitor YacG -
  D0C16_RS11270 (D0C16_11460) - 2610444..2611397 (-) 954 WP_151032478.1 Nudix family hydrolase -
  D0C16_RS11275 (D0C16_11465) argJ 2611414..2612634 (-) 1221 WP_151032479.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32795.79 Da        Isoelectric Point: 6.4684

>NTDB_id=310789 D0C16_RS11255 WP_151032476.1 2608677..2609573(+) (pilD) [Cellvibrio sp. KY-GH-1]
MDFFSLVHAHPALELSCVLILGLLVGSFLNVVIYRLPKMMEREWKQQCNELSSQNGDVASLPPISEPEEPFNLMVPGSRC
PSCGHKIKPWENIPMVSYLILGGKCSACKATISARYPTIELVTGLLSVAVIFYTGANWNGLAALIFTWSLIALTMIDFDT
YLLPDDITLPLLWLGLIANSFNAFTDLPSALWGAVAGYLSLWSVYKLFKLLTGKEGMGYGDFKLLAALGAWMGWQMLPQI
ILLSSLVGAVIGISLIVVRGRDKNIPIPFGPYLAIAGWIAFVWGDTINHAYLKLFVSY

Nucleotide


Download         Length: 897 bp        

>NTDB_id=310789 D0C16_RS11255 WP_151032476.1 2608677..2609573(+) (pilD) [Cellvibrio sp. KY-GH-1]
GTGGATTTTTTCTCCTTGGTGCACGCTCATCCGGCGCTCGAACTAAGCTGCGTATTAATTTTGGGTTTATTAGTCGGCAG
CTTTTTAAATGTAGTGATCTACCGGCTTCCAAAAATGATGGAACGTGAATGGAAGCAACAATGCAATGAGCTCAGCTCTC
AAAACGGAGATGTAGCTTCACTTCCCCCGATTAGCGAACCCGAGGAACCGTTTAACCTAATGGTTCCTGGCTCGCGCTGC
CCGAGCTGTGGACACAAAATAAAACCATGGGAGAATATTCCCATGGTTAGCTACCTGATATTGGGCGGCAAATGCTCCGC
ATGTAAAGCAACAATCTCCGCTCGATATCCAACCATAGAACTTGTGACAGGTCTGCTATCAGTCGCAGTCATCTTTTACA
CGGGAGCCAATTGGAACGGACTGGCAGCGCTGATATTTACCTGGTCGCTAATCGCACTAACCATGATTGATTTCGACACT
TATCTACTACCTGACGACATTACCCTACCTTTGTTATGGCTCGGCTTAATCGCTAACAGCTTCAATGCGTTTACTGATTT
ACCCAGTGCCCTGTGGGGTGCAGTTGCTGGTTATTTGTCACTTTGGTCAGTCTACAAGCTGTTTAAGCTACTGACGGGAA
AAGAAGGCATGGGGTATGGCGATTTTAAATTGCTGGCTGCACTGGGCGCCTGGATGGGCTGGCAGATGCTGCCGCAAATT
ATTTTATTGTCATCACTGGTTGGCGCAGTAATCGGGATTAGTTTAATTGTGGTGCGCGGTCGAGATAAAAATATTCCTAT
CCCATTTGGCCCATATTTAGCGATCGCAGGCTGGATTGCATTTGTATGGGGCGATACGATTAACCACGCCTACTTGAAGT
TATTTGTCAGCTACTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-132)

Type IV leader peptidase family (Peptidase_A24)

(145-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6P790

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.381

98.658

0.517
  pilD Acinetobacter baumannii D1279779

54.909

92.282

0.507
  pilD Acinetobacter nosocomialis M2

54.545

92.282

0.503
  pilD Vibrio campbellii strain DS40M4

51.203

97.651

0.5
  pilD Neisseria gonorrhoeae MS11

52.399

90.94

0.477

Multiple sequence alignment