Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0B88_RS07785 Genome accession   NZ_CP031727
Coordinates   1840611..1841891 (-) Length   426 a.a.
NCBI ID   WP_151056319.1    Uniprot ID   -
Organism   Cellvibrio sp. KY-YJ-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835611..1846891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B88_RS07760 (D0B88_07820) argJ 1836619..1837839 (+) 1221 WP_151056311.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  D0B88_RS07765 (D0B88_07825) - 1837880..1838836 (+) 957 WP_151056313.1 Nudix family hydrolase -
  D0B88_RS07770 (D0B88_07830) yacG 1838853..1839065 (-) 213 WP_151056315.1 DNA gyrase inhibitor YacG -
  D0B88_RS07775 (D0B88_07835) coaE 1839074..1839685 (-) 612 WP_151056317.1 dephospho-CoA kinase -
  D0B88_RS07780 (D0B88_07840) pilD 1839712..1840608 (-) 897 WP_370452492.1 A24 family peptidase Machinery gene
  D0B88_RS07785 (D0B88_07845) pilC 1840611..1841891 (-) 1281 WP_151056319.1 type II secretion system F family protein Machinery gene
  D0B88_RS07790 (D0B88_07850) pilB 1841895..1843619 (-) 1725 WP_151056321.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0B88_RS07795 (D0B88_07855) - 1843948..1844466 (+) 519 WP_151056323.1 pilin -
  D0B88_RS07800 (D0B88_07860) - 1844514..1845734 (+) 1221 WP_151056325.1 serine hydrolase -
  D0B88_RS07805 (D0B88_07865) tfpZ 1845759..1846460 (+) 702 WP_151056327.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45395.61 Da        Isoelectric Point: 10.0007

>NTDB_id=310765 D0B88_RS07785 WP_151056319.1 1840611..1841891(-) (pilC) [Cellvibrio sp. KY-YJ-3]
MALTTTSKPNSAASKTKAATKSKPIATTNTYSYKGTDKKGNKIQGEINGGSPTIVRALLAKQGITAKSVTKKSKPLFGSS
GKAIKPGDIAVFSRQMATMMKAGVPLVQAFDIVADGLENPNLKKLVLQIRDSVAAGGGFANSLREHPKYFDELFCNLVDA
GEQSGALETMLDRIATYKEKTEALKAKIKKALTYPIAVVIVAIVVTGILLVKVVPQFAQTFSGFGADLPAFTLFVLYLSE
LAQAYWLIILVGLIGFVFLFKEAARRSPAVAYAIDKYLLKLPIIGKILYLSVMARFARTLATTFAAGVPLIDALTSVAGA
AGNKIYSDAIIKVREDVSTGIQLNTALKARTIFPTLLIQMAAIGEESGALDAMLDKVAVYYEEAVDNMVDTLTSLLEPII
MSVLGVLVGGLLIAMYLPIFQLGAVV

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=310765 D0B88_RS07785 WP_151056319.1 1840611..1841891(-) (pilC) [Cellvibrio sp. KY-YJ-3]
ATGGCATTAACAACCACATCAAAGCCAAATAGCGCTGCAAGCAAAACAAAAGCGGCAACCAAATCAAAGCCTATCGCAAC
TACCAACACCTATTCCTATAAAGGTACTGATAAAAAAGGCAATAAGATTCAAGGTGAAATCAATGGCGGTAGCCCGACTA
TCGTAAGGGCGCTGTTAGCCAAACAAGGAATTACTGCAAAGTCAGTAACTAAAAAGTCCAAACCATTGTTCGGCTCAAGC
GGCAAAGCGATTAAACCGGGCGATATAGCCGTTTTTTCGCGTCAAATGGCGACTATGATGAAAGCAGGCGTACCACTAGT
TCAGGCCTTTGATATAGTCGCAGATGGATTGGAAAACCCGAACTTAAAAAAACTGGTACTTCAAATTAGAGACAGTGTGG
CAGCTGGCGGCGGTTTCGCTAACTCGCTAAGAGAACACCCCAAATATTTCGATGAGCTATTCTGTAACCTTGTTGATGCA
GGTGAGCAATCGGGCGCACTTGAAACCATGCTAGACCGAATCGCGACTTATAAAGAAAAAACTGAGGCATTAAAAGCCAA
AATTAAAAAAGCACTTACCTACCCAATAGCTGTAGTTATAGTGGCTATAGTCGTAACAGGTATTCTTCTAGTAAAAGTTG
TGCCGCAGTTTGCGCAAACCTTCAGTGGTTTTGGTGCTGATCTTCCGGCATTTACTTTGTTTGTTTTATATTTATCGGAA
CTTGCTCAAGCCTATTGGCTGATTATTCTTGTAGGACTCATTGGTTTTGTCTTCCTATTTAAGGAGGCTGCTCGTCGCTC
ACCGGCGGTCGCTTATGCAATTGATAAATACTTACTTAAATTACCAATCATAGGCAAGATTCTTTATTTATCTGTTATGG
CACGCTTTGCACGTACACTCGCCACAACCTTTGCGGCAGGCGTCCCACTTATTGATGCACTGACATCTGTTGCAGGAGCT
GCAGGCAATAAAATCTATTCCGATGCGATAATAAAAGTACGTGAAGACGTATCCACTGGGATACAGCTAAATACTGCGCT
TAAAGCGAGAACCATCTTCCCTACACTTCTGATACAAATGGCTGCTATCGGTGAAGAATCTGGCGCACTGGATGCGATGC
TGGATAAAGTAGCTGTTTATTACGAAGAGGCTGTAGATAATATGGTTGATACACTGACCTCCTTATTAGAGCCGATAATT
ATGTCGGTACTCGGTGTCTTAGTCGGCGGCCTGCTAATTGCCATGTACCTTCCAATCTTCCAACTCGGTGCGGTTGTATA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-215)

Type II secretion system (T2SS), protein F (T2SSF)

(296-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.905

93.662

0.58
  pilC Legionella pneumophila strain ERS1305867

58.186

93.192

0.542
  pilC Acinetobacter baumannii D1279779

57.286

93.427

0.535
  pilC Acinetobacter baylyi ADP1

57.179

93.192

0.533
  pilC Vibrio cholerae strain A1552

41.667

95.775

0.399
  pilG Neisseria gonorrhoeae MS11

42.821

93.192

0.399
  pilG Neisseria meningitidis 44/76-A

42.821

93.192

0.399
  pilC Vibrio campbellii strain DS40M4

40.554

93.192

0.378

Multiple sequence alignment