Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   D0B88_RS07780 Genome accession   NZ_CP031727
Coordinates   1839712..1840608 (-) Length   298 a.a.
NCBI ID   WP_370452492.1    Uniprot ID   -
Organism   Cellvibrio sp. KY-YJ-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834712..1845608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B88_RS07760 (D0B88_07820) argJ 1836619..1837839 (+) 1221 WP_151056311.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  D0B88_RS07765 (D0B88_07825) - 1837880..1838836 (+) 957 WP_151056313.1 Nudix family hydrolase -
  D0B88_RS07770 (D0B88_07830) yacG 1838853..1839065 (-) 213 WP_151056315.1 DNA gyrase inhibitor YacG -
  D0B88_RS07775 (D0B88_07835) coaE 1839074..1839685 (-) 612 WP_151056317.1 dephospho-CoA kinase -
  D0B88_RS07780 (D0B88_07840) pilD 1839712..1840608 (-) 897 WP_370452492.1 A24 family peptidase Machinery gene
  D0B88_RS07785 (D0B88_07845) pilC 1840611..1841891 (-) 1281 WP_151056319.1 type II secretion system F family protein Machinery gene
  D0B88_RS07790 (D0B88_07850) pilB 1841895..1843619 (-) 1725 WP_151056321.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0B88_RS07795 (D0B88_07855) - 1843948..1844466 (+) 519 WP_151056323.1 pilin -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32721.98 Da        Isoelectric Point: 6.8417

>NTDB_id=310764 D0B88_RS07780 WP_370452492.1 1839712..1840608(-) (pilD) [Cellvibrio sp. KY-YJ-3]
MTLFSALQAYPILGMACALVLGLLVGSFLNVVIYRLPKMMERDWQNQCKDFLASDSNIAALPSQDEKQDPFNLMVPASRC
PGCGHKIRAWENIPVISYVCLGGKCSSCKTAISIRYPIIEVITGVLSIIAIGYFGINWNGLAALILTWSLIALTMIDIDT
YLLPDDITLPLLWLGLIVNSFGVFTDLPSALWGAIAGYMSLWLVYQTFKLVTGKEGMGFGDFKLLAALGAWMGWQLLPQI
ILLSSLVGAVIGIAMIIMRGRDKNIPIPFGPYLAIAGWIAFIWGDTINQTYLKLFVTN

Nucleotide


Download         Length: 897 bp        

>NTDB_id=310764 D0B88_RS07780 WP_370452492.1 1839712..1840608(-) (pilD) [Cellvibrio sp. KY-YJ-3]
GTGACTCTTTTTTCTGCTCTGCAAGCCTACCCGATTTTGGGTATGGCTTGTGCCTTAGTCCTAGGTTTACTAGTTGGCAG
TTTTCTAAATGTTGTTATTTATCGCCTACCAAAAATGATGGAGCGCGACTGGCAAAACCAATGTAAAGATTTTCTCGCCA
GTGATAGCAATATAGCTGCACTTCCTTCACAAGACGAAAAGCAGGACCCCTTCAATTTAATGGTTCCTGCATCGCGCTGC
CCTGGCTGCGGGCATAAAATTCGCGCATGGGAAAATATTCCTGTTATTAGTTATGTATGCCTTGGCGGTAAGTGTTCCAG
CTGCAAAACGGCAATTTCTATTCGCTACCCAATTATTGAAGTTATTACCGGTGTGCTCTCGATAATTGCGATCGGCTATT
TTGGAATTAACTGGAACGGGCTAGCCGCGCTAATACTCACTTGGTCACTCATCGCATTGACCATGATTGACATAGATACC
TATTTGTTGCCCGACGATATAACCCTGCCTTTGCTGTGGCTGGGTTTGATCGTTAATAGCTTTGGTGTATTTACCGATTT
ACCCAGCGCATTGTGGGGGGCAATTGCAGGTTATATGTCTCTGTGGCTGGTATACCAGACCTTCAAGCTGGTGACCGGAA
AAGAAGGAATGGGCTTCGGGGATTTCAAATTGCTGGCTGCACTGGGCGCGTGGATGGGCTGGCAACTGCTGCCGCAAATT
ATTTTACTGTCATCGTTGGTAGGTGCAGTAATTGGCATCGCGATGATAATAATGCGTGGACGCGATAAAAATATTCCAAT
TCCCTTTGGCCCCTACCTTGCTATTGCAGGCTGGATTGCATTCATATGGGGAGACACCATCAATCAAACTTATTTGAAGT
TATTTGTCACTAACTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(144-253)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

54.196

95.973

0.52
  pilD Acinetobacter nosocomialis M2

53.147

95.973

0.51
  pilD Neisseria gonorrhoeae MS11

54.815

90.604

0.497
  pilD Vibrio cholerae strain A1552

48.958

96.644

0.473
  pilD Vibrio campbellii strain DS40M4

47.766

97.651

0.466

Multiple sequence alignment