Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BEN71_RS02135 Genome accession   NZ_CP031716
Coordinates   314216..315442 (-) Length   408 a.a.
NCBI ID   WP_068973844.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309216..320442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS02110 (BEN71_02110) - 310466..310789 (+) 324 WP_068973849.1 pyrimidine/purine nucleoside phosphorylase -
  BEN71_RS02115 (BEN71_02115) rlmB 310967..311719 (+) 753 WP_068973848.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BEN71_RS02120 (BEN71_02120) - 311776..312693 (+) 918 WP_068973847.1 DMT family transporter -
  BEN71_RS02125 (BEN71_02125) coaE 312706..313317 (-) 612 WP_068973846.1 dephospho-CoA kinase -
  BEN71_RS02130 (BEN71_02130) pilD 313356..314216 (-) 861 WP_068973845.1 A24 family peptidase Machinery gene
  BEN71_RS02135 (BEN71_02135) pilC 314216..315442 (-) 1227 WP_068973844.1 type II secretion system F family protein Machinery gene
  BEN71_RS02140 (BEN71_02140) pilB 315470..317182 (-) 1713 WP_068973843.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BEN71_RS02145 (BEN71_02145) tpiA 317472..318266 (+) 795 WP_068973842.1 triose-phosphate isomerase -
  BEN71_RS02150 (BEN71_02150) secG 318276..318608 (+) 333 WP_068973841.1 preprotein translocase subunit SecG -
  BEN71_RS02175 (BEN71_02175) rimP 319613..320137 (+) 525 WP_068973840.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44929.43 Da        Isoelectric Point: 9.8367

>NTDB_id=310672 BEN71_RS02135 WP_068973844.1 314216..315442(-) (pilC) [Acinetobacter wuhouensis strain WCHA60]
MAAKKAQMMPTFAYDGVDRKGVKIKGELPARNMALAKVTLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPIAVICVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQSYWFILIIFIAVVIT
AFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEEAVLKIRDDVA
TGQQLNFAMRVTNKFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=310672 BEN71_RS02135 WP_068973844.1 314216..315442(-) (pilC) [Acinetobacter wuhouensis strain WCHA60]
ATGGCAGCTAAAAAAGCTCAAATGATGCCAACATTTGCATATGACGGGGTTGATCGTAAAGGGGTCAAAATCAAAGGTGA
ACTGCCTGCACGTAATATGGCACTGGCTAAAGTGACTTTAAGAAAGCAAGGCATCACCATCAAAACCATTCGAGAAAAAA
AGAAAAATATTCTCGAAGGTTTAATGAAGAAAAAAGTTTCAACCTTAGATATCACGATTTTCACACGTCAATTAGCCACC
ATGATGAAAGCTGGCGTACCTTTGGTTCAAAGTTTTGAAATCGTTGCTGAAGGTTTAGAAAATCCATCGATGCGTGAAGT
AGTTTTGGGAATCAAAGGTGAAGTCGAAGGCGGTAACACTTTTGCAGGGGCTTTAAGAAAATACCCTCAGTATTTTGATA
ACCTATTTTGTTCATTGGTTGAATCAGGAGAACAGTCTGGTGCGCTTGAAACCATGTTGGACCGTGTTGCAATCTATAAA
GAAAAATCTGAATTACTTAAACAAAAAATTAAAAAAGCGATGAAGTATCCCATCGCAGTTATTTGTGTTGCGATCATTGT
TACCATTATTTTGATGGTCAAAGTTGTTCCTGTATTCCAAGACTTATTTAGCTCATTTGGTGCTGATCTTCCTGCTTTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAAAGTTATTGGTTTATTCTAATTATCTTTATTGCTGTTGTGATTACG
GCTTTCCTTGAAGCAAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTCAAAGCACCTATTTTTGG
TGATTTGGTCTATAAAGCCATTATTGCACGCTATAGCCGTACTTTAGCAACAACATTTGCAGCAGGTGTTCCACTGATTG
AAGCATTGGAGTCCACAGCAGGTGCAACCAACAACGTGGTCTATGAAGAAGCTGTCCTCAAAATTCGTGATGACGTGGCT
ACAGGACAACAACTTAACTTTGCGATGCGAGTGACCAATAAATTCCCTTCCATGGCAATTCAAATGGTTGCTATTGGCGA
AGAATCAGGTGCACTTGATGCCATGCTCGATAAAGTCGCAACACACTTTGAAAATGAAGTCGATAATGCTGTTGATGGCT
TAACTTCAATGATGGAGCCGTTGATCATGGCTGTGCTTGGTGTACTTGTGGGTGGTCTCGTAATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.706

100

0.897
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

61.084

99.51

0.608
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.752

99.755

0.426
  pilC Vibrio campbellii strain DS40M4

41.337

99.02

0.409

Multiple sequence alignment