Detailed information NTG0310671

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BEN71_RS02130
• Genome accession: NZ_CP031716
• Coordinates: 313356..314216 (-)
• Length: 286 a.a.
• NCBI ID: WP_068973845.1
• Uniprot ID: -
• Organism: Acinetobacter wuhouensis strain WCHA60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308356..319216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN71_RS02105 (BEN71_02105)	-	309071..310382 (+)	1312	Protein_272	tetratricopeptide repeat protein	-
BEN71_RS02110 (BEN71_02110)	-	310466..310789 (+)	324	WP_068973849.1	pyrimidine/purine nucleoside phosphorylase	-
BEN71_RS02115 (BEN71_02115)	rlmB	310967..311719 (+)	753	WP_068973848.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BEN71_RS02120 (BEN71_02120)	-	311776..312693 (+)	918	WP_068973847.1	DMT family transporter	-
BEN71_RS02125 (BEN71_02125)	coaE	312706..313317 (-)	612	WP_068973846.1	dephospho-CoA kinase	-
BEN71_RS02130 (BEN71_02130)	pilD	313356..314216 (-)	861	WP_068973845.1	A24 family peptidase	Machinery gene
BEN71_RS02135 (BEN71_02135)	pilC	314216..315442 (-)	1227	WP_068973844.1	type II secretion system F family protein	Machinery gene
BEN71_RS02140 (BEN71_02140)	pilB	315470..317182 (-)	1713	WP_068973843.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BEN71_RS02145 (BEN71_02145)	tpiA	317472..318266 (+)	795	WP_068973842.1	triose-phosphate isomerase	-
BEN71_RS02150 (BEN71_02150)	secG	318276..318608 (+)	333	WP_068973841.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31998.33 Da
• Isoelectric Point: 7.4700

>NTDB_id=310671 BEN71_RS02130 WP_068973845.1 313356..314216(-) (pilD) [Acinetobacter wuhouensis strain WCHA60]
MQELLDYLIQTPTALYLTVGVLSLCIGSFLNVVIYRTPKIMEQEWHTDCQLLLHPEQPIIDEEKLSLSKPASTCPKCKTS
IRWYQNIPVISWLALRGKCGTCQNPISIRYPFIELLTAVCSLIVVAVFGPTLQMVFGVFLTWILITLTFIDFDTQLLPDR
FTLTLGAIGLGINSFNIYTTATSAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIILLSSV
VGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=310671 BEN71_RS02130 WP_068973845.1 313356..314216(-) (pilD) [Acinetobacter wuhouensis strain WCHA60]
ATGCAAGAGCTTCTCGATTATTTGATTCAAACACCAACAGCGCTTTATTTGACTGTTGGTGTGCTTAGTTTGTGCATAGG
TAGTTTTTTAAATGTTGTCATTTACAGAACACCCAAAATAATGGAACAAGAGTGGCATACTGACTGTCAACTTCTGCTTC
ATCCAGAGCAGCCCATCATTGATGAAGAAAAACTCAGTTTAAGCAAACCAGCTTCAACATGCCCAAAATGCAAAACCTCA
ATTCGTTGGTATCAAAATATACCTGTTATTAGTTGGTTAGCATTAAGAGGAAAATGCGGTACTTGCCAAAACCCGATTAG
TATTCGCTATCCCTTTATCGAATTACTGACTGCTGTATGCTCTTTAATCGTCGTTGCTGTTTTTGGACCAACTTTACAAA
TGGTTTTCGGGGTCTTTTTAACATGGATACTGATCACCCTTACCTTTATTGATTTTGATACCCAACTACTCCCAGATCGC
TTCACTCTGACACTGGGTGCGATTGGCTTAGGCATTAACAGTTTTAACATATACACCACTGCAACATCAGCAATCTGGGG
CTATATTATTGGTTTTCTATGCTTATGGATTGTCTACTACCTCTTTAAAATTGTGACTGGTAAAGAAGGCATGGGCTATG
GTGATTTTAAATTACTTGCAGCATTGGGTGCATGGATGGGACCATTACTCCTCCCATTAATTATTCTATTGTCATCAGTT
GTAGGCGCGATTATTGGAATTATTCTCCTCAAAATACGCAAGGAAAATATTCCTTTCGCATTTGGTCCTTATATCGCGAT
AGCAGGTTGGATTGCTTTCTTATGGGGCGATCAAATCATGAAGATTTATTTAGGACAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Acinetobacter nosocomialis M2	78.596	99.65	0.783
pilD	Vibrio cholerae strain A1552	55.224	93.706	0.517
pilD	Vibrio campbellii strain DS40M4	54.682	93.357	0.51
pilD	Neisseria gonorrhoeae MS11	45.324	97.203	0.441