Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E4K02_RS12380 Genome accession   NZ_CP038258
Coordinates   2516471..2516911 (-) Length   146 a.a.
NCBI ID   WP_002125488.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2511471..2521911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12350 (E4K02_12350) - 2512252..2512635 (+) 384 WP_000090000.1 RidA family protein -
  E4K02_RS12355 (E4K02_12355) - 2512845..2513039 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  E4K02_RS12360 (E4K02_12360) bfr 2513284..2513748 (+) 465 WP_000678123.1 bacterioferritin -
  E4K02_RS12365 (E4K02_12365) - 2513790..2515418 (-) 1629 WP_109267663.1 PglL family O-oligosaccharyltransferase -
  E4K02_RS12370 (E4K02_12370) vapB 2515571..2515798 (+) 228 WP_002125542.1 type II toxin-antitoxin system VapB family antitoxin -
  E4K02_RS12375 (E4K02_12375) - 2515810..2516199 (+) 390 WP_002125552.1 type II toxin-antitoxin system VapC family toxin -
  E4K02_RS12380 (E4K02_12380) pilA 2516471..2516911 (-) 441 WP_002125488.1 pilin Machinery gene
  E4K02_RS12385 (E4K02_12385) - 2517252..2517812 (-) 561 WP_002125582.1 TPM domain-containing protein -
  E4K02_RS12390 (E4K02_12390) - 2517806..2518888 (-) 1083 WP_001246384.1 YgcG family protein -
  E4K02_RS12395 (E4K02_12395) - 2518910..2519500 (-) 591 WP_000846931.1 LemA family protein -
  E4K02_RS12400 (E4K02_12400) - 2519631..2520518 (-) 888 WP_004833668.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14790.95 Da        Isoelectric Point: 7.5871

>NTDB_id=310463 E4K02_RS12380 WP_002125488.1 2516471..2516911(-) (pilA) [Acinetobacter baumannii strain 39741]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSKASAALADIASLKTGYETWYSENGETGLNLAAVGGQTPTGNCS
TVAVNPPAAGAPSATTDAIKCTINAPGRLASTAGTAVSIQFDRSATGLFSCTTTNMVADFKPKGCV

Nucleotide


Download         Length: 441 bp        

>NTDB_id=310463 E4K02_RS12380 WP_002125488.1 2516471..2516911(-) (pilA) [Acinetobacter baumannii strain 39741]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATCATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAAAACTATATTGCAAAGTCAAAAGCTTCTGCTGCTTTAGCTGATATTGCTTCATTAAAAACAGGTTATG
AAACTTGGTATAGTGAAAATGGTGAGACAGGCTTAAATTTAGCAGCTGTTGGTGGTCAAACGCCAACTGGGAATTGTTCT
ACTGTAGCAGTAAATCCTCCAGCTGCTGGTGCTCCCTCTGCTACAACAGATGCAATTAAATGTACTATTAATGCTCCTGG
ACGTTTAGCTAGTACTGCTGGTACTGCCGTTTCTATTCAGTTTGATCGCTCAGCTACAGGTTTATTCTCATGTACTACTA
CAAACATGGTTGCAGACTTTAAGCCAAAAGGTTGTGTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

42.308

100

0.452
  pilA Acinetobacter baumannii strain A118

44.521

100

0.445
  pilA Vibrio cholerae C6706

42.953

100

0.438
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.953

100

0.438
  pilA Vibrio cholerae strain A1552

42.953

100

0.438
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.361

98.63

0.418
  pilA2 Legionella pneumophila str. Paris

39.216

100

0.411
  pilA2 Legionella pneumophila strain ERS1305867

38.562

100

0.404
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.583

98.63

0.39