Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH556_RS03585 | Genome accession | NZ_CP031692 |
| Coordinates | 703082..703531 (+) | Length | 149 a.a. |
| NCBI ID | WP_116945236.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P595-8370 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 698082..708531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH556_RS03565 (CH556_03565) | rsmE | 698542..699279 (-) | 738 | WP_038439236.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH556_RS03570 (CH556_03570) | lnt | 699329..700858 (-) | 1530 | WP_116945309.1 | apolipoprotein N-acyltransferase | - |
| CH556_RS03575 (CH556_03575) | corC | 700881..701780 (-) | 900 | WP_005648977.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH556_RS03580 (CH556_03580) | ampD | 702414..702968 (-) | 555 | WP_116945237.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH556_RS03585 (CH556_03585) | pilA | 703082..703531 (+) | 450 | WP_116945236.1 | prepilin peptidase-dependent pilin | Machinery gene |
| CH556_RS03590 (CH556_03590) | pilB | 703528..704922 (+) | 1395 | WP_116945235.1 | GspE/PulE family protein | Machinery gene |
| CH556_RS03595 (CH556_03595) | pilC | 704919..706139 (+) | 1221 | WP_116945234.1 | type II secretion system F family protein | Machinery gene |
| CH556_RS03600 (CH556_03600) | pilD | 706136..706828 (+) | 693 | WP_116945233.1 | A24 family peptidase | Machinery gene |
| CH556_RS03605 (CH556_03605) | rho | 706882..708144 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15531.84 Da Isoelectric Point: 8.7927
>NTDB_id=310274 CH556_RS03585 WP_116945236.1 703082..703531(+) (pilA) [Haemophilus influenzae strain P595-8370]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKSDVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVAGNGTLDGMNYTLTAEGDSAKGVTWKTTCKGTDASLFPANFCRSITQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKSDVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVAGNGTLDGMNYTLTAEGDSAKGVTWKTTCKGTDASLFPANFCRSITQ
Nucleotide
Download Length: 450 bp
>NTDB_id=310274 CH556_RS03585 WP_116945236.1 703082..703531(+) (pilA) [Haemophilus influenzae strain P595-8370]
ATGAAATTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCTTCTGCGC
CTTATAAGTCAGATGTGGAATTATGCGTTTATAGCACAGGTAAACCTTCTACTTGCTCAGGAGGAAGCAATGGAATTGCA
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAGCGGGTAATGGTAC
ATTAGATGGAATGAATTACACGCTCACGGCTGAAGGCGATAGTGCAAAAGGCGTTACATGGAAAACCACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCAGAAGTATCACACAATGA
ATGAAATTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCTTCTGCGC
CTTATAAGTCAGATGTGGAATTATGCGTTTATAGCACAGGTAAACCTTCTACTTGCTCAGGAGGAAGCAATGGAATTGCA
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAGCGGGTAATGGTAC
ATTAGATGGAATGAATTACACGCTCACGGCTGAAGGCGATAGTGCAAAAGGCGTTACATGGAAAACCACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCAGAAGTATCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
85.235 |
100 |
0.852 |
| pilA | Haemophilus influenzae Rd KW20 |
80.537 |
100 |
0.805 |
| pilA | Glaesserella parasuis strain SC1401 |
59.459 |
99.329 |
0.591 |
| pilA2 | Legionella pneumophila str. Paris |
41.06 |
100 |
0.416 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.06 |
100 |
0.416 |
| comP | Acinetobacter baylyi ADP1 |
41.781 |
97.987 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
40.278 |
96.644 |
0.389 |