Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH624_RS04015 | Genome accession | NZ_CP031682 |
| Coordinates | 765329..765769 (+) | Length | 146 a.a. |
| NCBI ID | WP_112109935.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P665-7858 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 760329..770769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH624_RS03995 (CH624_03995) | rsmE | 760780..761517 (-) | 738 | WP_042611225.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH624_RS04000 (CH624_04000) | lnt | 761567..763096 (-) | 1530 | WP_112074650.1 | apolipoprotein N-acyltransferase | - |
| CH624_RS04005 (CH624_04005) | corC | 763119..764018 (-) | 900 | WP_005662987.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH624_RS04010 (CH624_04010) | ampD | 764654..765214 (-) | 561 | WP_005648974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH624_RS04015 (CH624_04015) | pilA | 765329..765769 (+) | 441 | WP_112109935.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH624_RS04020 (CH624_04020) | pilB | 765766..767157 (+) | 1392 | WP_112109934.1 | GspE/PulE family protein | Machinery gene |
| CH624_RS04025 (CH624_04025) | pilC | 767154..768374 (+) | 1221 | WP_112109933.1 | type II secretion system F family protein | Machinery gene |
| CH624_RS04030 (CH624_04030) | pilD | 768371..769063 (+) | 693 | WP_041175383.1 | prepilin peptidase | Machinery gene |
| CH624_RS04035 (CH624_04035) | rho | 769117..770379 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15177.56 Da Isoelectric Point: 9.1092
>NTDB_id=309923 CH624_RS04015 WP_112109935.1 765329..765769(+) (pilA) [Haemophilus influenzae strain P665-7858]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCGKTNADIFPAGFCSK
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCGKTNADIFPAGFCSK
Nucleotide
Download Length: 441 bp
>NTDB_id=309923 CH624_RS04015 WP_112109935.1 765329..765769(+) (pilA) [Haemophilus influenzae strain P665-7858]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACCACCTGCGGCAAAA
CGAATGCCGATATTTTCCCTGCTGGATTCTGTTCAAAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACCACCTGCGGCAAAA
CGAATGCCGATATTTTCCCTGCTGGATTCTGTTCAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
89.583 |
98.63 |
0.884 |
| pilA | Haemophilus influenzae Rd KW20 |
84.722 |
98.63 |
0.836 |
| pilA | Glaesserella parasuis strain SC1401 |
52.703 |
100 |
0.534 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.136 |
100 |
0.404 |
| pilA2 | Legionella pneumophila str. Paris |
40.136 |
100 |
0.404 |
| pilA | Vibrio campbellii strain DS40M4 |
37.857 |
95.89 |
0.363 |
| comP | Acinetobacter baylyi ADP1 |
41.732 |
86.986 |
0.363 |