Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EZV63_RS11105 Genome accession   NZ_CP036534
Coordinates   2544033..2544638 (-) Length   201 a.a.
NCBI ID   WP_031040345.1    Uniprot ID   A0ABS7WEV1
Organism   Streptomyces sp. VN1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539033..2549638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS11090 (EZV63_11215) - 2540697..2541686 (+) 990 WP_037767071.1 hypothetical protein -
  EZV63_RS11095 (EZV63_11220) clpX 2541791..2543077 (-) 1287 WP_031040350.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EZV63_RS11100 (EZV63_11225) clpP 2543269..2543982 (-) 714 WP_031040348.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EZV63_RS11105 (EZV63_11230) clpP 2544033..2544638 (-) 606 WP_031040345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EZV63_RS11110 (EZV63_11235) tig 2545007..2546446 (-) 1440 WP_070388077.1 trigger factor -
  EZV63_RS11125 (EZV63_11250) - 2547054..2548223 (-) 1170 WP_166624055.1 site-specific integrase -
  EZV63_RS11130 (EZV63_11255) - 2548223..2548438 (-) 216 WP_166624056.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21246.12 Da        Isoelectric Point: 4.6747

>NTDB_id=308339 EZV63_RS11105 WP_031040345.1 2544033..2544638(-) (clpP) [Streptomyces sp. VN1]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLVDDVITTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=308339 EZV63_RS11105 WP_031040345.1 2544033..2544638(-) (clpP) [Streptomyces sp. VN1]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCCATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCGTCGACGACGTGAT
CACCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.14

85.572

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.297

90.547

0.483
  clpP Lactococcus lactis subsp. cremoris KW2

52.174

91.542

0.478
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.63

91.542

0.473
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus pneumoniae Rx1

49.711

86.07

0.428
  clpP Streptococcus pneumoniae D39

49.711

86.07

0.428
  clpP Streptococcus pneumoniae R6

49.711

86.07

0.428
  clpP Streptococcus pneumoniae TIGR4

49.711

86.07

0.428

Multiple sequence alignment