Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EZV63_RS11100 Genome accession   NZ_CP036534
Coordinates   2543269..2543982 (-) Length   237 a.a.
NCBI ID   WP_031040348.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2538269..2548982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS11090 (EZV63_11215) - 2540697..2541686 (+) 990 WP_037767071.1 hypothetical protein -
  EZV63_RS11095 (EZV63_11220) clpX 2541791..2543077 (-) 1287 WP_031040350.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EZV63_RS11100 (EZV63_11225) clpP 2543269..2543982 (-) 714 WP_031040348.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EZV63_RS11105 (EZV63_11230) clpP 2544033..2544638 (-) 606 WP_031040345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  EZV63_RS11110 (EZV63_11235) tig 2545007..2546446 (-) 1440 WP_070388077.1 trigger factor -
  EZV63_RS11125 (EZV63_11250) - 2547054..2548223 (-) 1170 WP_166624055.1 site-specific integrase -
  EZV63_RS11130 (EZV63_11255) - 2548223..2548438 (-) 216 WP_166624056.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26300.73 Da        Isoelectric Point: 4.6617

>NTDB_id=308338 EZV63_RS11100 WP_031040348.1 2543269..2543982(-) (clpP) [Streptomyces sp. VN1]
MNDFPGSGLYDRMHDAQDTRGAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVM
AQLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQP
YSETGRGQVSDLEIAANEILRMRTQLEDMLAKHSTTPVEKIREDIERDKILTAEDTLAYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=308338 EZV63_RS11100 WP_031040348.1 2543269..2543982(-) (clpP) [Streptomyces sp. VN1]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGCACGACGCCCAGGACACGCGTGGCGCCGCCTCCCAGGGCCG
CTACACCGGCCCGCAGGCCGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACG
ACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATG
GCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCAC
GGCGCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCG
CCGCCGCCGTCCTGCTGGCCGCCGGCACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCG
TACAGCGAGACCGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCACGCAGCTGGA
GGACATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCG
AGGACACCCTGGCCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.169

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

79.325

0.405
  clpP Streptococcus pyogenes MGAS315

45.274

84.81

0.384
  clpP Streptococcus pyogenes JRS4

45.274

84.81

0.384
  clpP Streptococcus mutans UA159

44.39

86.498

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

85.232

0.38
  clpP Streptococcus thermophilus LMD-9

45.641

82.278

0.376
  clpP Streptococcus thermophilus LMG 18311

45.641

82.278

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

85.232

0.371
  clpP Streptococcus pneumoniae Rx1

44.388

82.7

0.367
  clpP Streptococcus pneumoniae D39

44.388

82.7

0.367
  clpP Streptococcus pneumoniae R6

44.388

82.7

0.367
  clpP Streptococcus pneumoniae TIGR4

44.388

82.7

0.367

Multiple sequence alignment