Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DVV14_RS10885 Genome accession   NZ_CP031472
Coordinates   2361457..2362740 (-) Length   427 a.a.
NCBI ID   WP_234425328.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2356457..2367740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS10865 (DVV14_10925) - 2357201..2358028 (-) 828 WP_006957149.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  DVV14_RS10870 (DVV14_10930) - 2358098..2359600 (-) 1503 WP_064488157.1 AAA family ATPase -
  DVV14_RS10875 (DVV14_10935) aroB 2359642..2360730 (-) 1089 WP_064488158.1 3-dehydroquinate synthase -
  DVV14_RS10880 (DVV14_10940) aroK 2360762..2361280 (-) 519 WP_006957155.1 shikimate kinase AroK -
  DVV14_RS10885 (DVV14_10945) pilQ 2361457..2362740 (-) 1284 WP_234425328.1 type IV pilus secretin PilQ family protein Machinery gene
  DVV14_RS10890 (DVV14_10950) - 2362834..2363346 (-) 513 WP_064488159.1 pilus assembly protein PilP -
  DVV14_RS10895 (DVV14_10955) pilO 2363336..2363926 (-) 591 WP_064488160.1 type 4a pilus biogenesis protein PilO -
  DVV14_RS10900 (DVV14_10960) - 2363919..2364476 (-) 558 WP_064488161.1 PilN domain-containing protein -
  DVV14_RS10905 (DVV14_10965) pilM 2364466..2365383 (-) 918 WP_064488162.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46372.86 Da        Isoelectric Point: 4.5083

>NTDB_id=307058 DVV14_RS10885 WP_234425328.1 2361457..2362740(-) (pilQ) [Vibrio coralliilyticus strain RE22]
MKPELEVEESRTDKLSVNFQDIPVRHVLQQIADYNDFNLVVSDAVSGNLTLRVKEVPWPQLLDIILRMKGLEKRMDGSVL
LVATAAEIAEFRQQKLEQEKVTAELQPLESEIIAMRFAKAADIAALLSDSAATRMLSERGAISIDTRTNSLLIRDVAINI
QAMKAIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSIENNLADLNLYGDSDSSLDDFLNVNLAA
TSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASSGATSVNFKKAVLSL
KVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHSVSDTVDQVPLLGDIPLL
GALFRRTYQQMGKSELLIFVTPTVVAP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=307058 DVV14_RS10885 WP_234425328.1 2361457..2362740(-) (pilQ) [Vibrio coralliilyticus strain RE22]
ATGAAGCCTGAGCTTGAGGTAGAAGAAAGCAGGACCGACAAGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCATGT
ATTGCAGCAGATTGCGGATTACAACGATTTTAATCTGGTTGTTTCAGATGCCGTGTCTGGCAATCTGACCCTAAGAGTGA
AGGAGGTTCCGTGGCCACAGTTACTCGATATCATTTTGCGTATGAAGGGATTAGAGAAGCGCATGGATGGCAGTGTGTTG
CTGGTGGCAACGGCGGCTGAAATTGCTGAGTTCAGACAACAAAAGTTGGAACAGGAGAAAGTCACGGCTGAGCTTCAACC
GTTAGAATCTGAGATTATCGCTATGAGGTTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACGC
GGATGTTGTCTGAACGAGGGGCGATTTCAATCGATACTCGAACCAATAGCCTGTTAATTCGCGATGTTGCTATCAATATT
CAAGCGATGAAGGCGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTACAAATTGAGGCGCGCATAGTCAGCTTGAA
TGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTTAGTTCGACCAACGGCAGTCACAGTGTGGGAGGCTCGATAG
AAAATAACTTAGCCGATCTCAATCTGTATGGGGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGCG
ACGTCCGTGAACGCTTCGACGATTGCTTTTCAGGTCGCTAAGCTGGGCAGTGACACTTTACTGGATTTAGAATTGTCAGC
GTTGCAAAGGGAATCGAGAGCAGAAGTTATATCCAGTCCGCGTCTGATTACCACCAACAAGCAACCGGCTTACATTGAGC
AGGGGACTGAAATTCCTTATTTAGAGGCGGCCTCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGTTAAGTTTA
AAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTGGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGGT
CAAAACCGGCACTGGGGAAGCTGTTGCGATAGACACGCAACGTATCGGTACTCAGGTACTGGTCAATAATGGCGAAACCA
TTGTTCTGGGTGGCATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTGCCGTTGTTAGGCGATATTCCTTTGCTA
GGTGCGCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAACAGTGGTTGCGCC
TTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(111-176)

Bacterial type II and III secretion system protein (Secretin)

(267-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

70.755

99.297

0.703
  pilQ Vibrio cholerae strain A1552

70.755

99.297

0.703
  pilQ Vibrio campbellii strain DS40M4

71.599

98.126

0.703
  pilQ Legionella pneumophila strain ERS1305867

46.778

98.126

0.459
  pilQ Legionella pneumophila strain Lp02

46.778

98.126

0.459
  comQ Acinetobacter baylyi ADP1

42.438

100

0.44
  pilQ Pseudomonas aeruginosa PAK

43.692

100

0.438
  pilQ Acinetobacter baumannii D1279779

38.512

100

0.412
  pilQ Acinetobacter baumannii strain A118

38.512

100

0.412
  comE Haemophilus influenzae 86-028NP

41.565

95.785

0.398
  comE Haemophilus influenzae Rd KW20

40.625

97.424

0.396

Multiple sequence alignment