Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DW350_RS16430 Genome accession   NZ_CP031416
Coordinates   3464852..3466090 (-) Length   412 a.a.
NCBI ID   WP_115719974.1    Uniprot ID   -
Organism   Gallaecimonas mangrovi strain HK-28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459852..3471090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW350_RS16395 pdhR 3460114..3460893 (-) 780 WP_115720669.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  DW350_RS16400 ampE 3461025..3461825 (-) 801 WP_115719969.1 regulatory signaling modulator protein AmpE -
  DW350_RS16405 ampD 3461822..3462364 (-) 543 WP_115719970.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DW350_RS16410 yacG 3462431..3462604 (-) 174 WP_115719971.1 DNA gyrase inhibitor YacG -
  DW350_RS16415 - 3462614..3463351 (-) 738 WP_115719972.1 cell division protein ZapD -
  DW350_RS16420 coaE 3463383..3463985 (-) 603 WP_115719973.1 dephospho-CoA kinase -
  DW350_RS16425 pilD 3463982..3464845 (-) 864 WP_192954719.1 prepilin peptidase Machinery gene
  DW350_RS16430 pilC 3464852..3466090 (-) 1239 WP_115719974.1 type II secretion system F family protein Machinery gene
  DW350_RS16435 pilB 3466100..3467812 (-) 1713 WP_115719975.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DW350_RS16440 - 3467840..3468271 (-) 432 WP_115719976.1 pilin -
  DW350_RS16445 nadC 3468601..3469452 (+) 852 WP_115719977.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DW350_RS16450 - 3469496..3470347 (-) 852 WP_115719978.1 universal stress protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45243.15 Da        Isoelectric Point: 9.9389

>NTDB_id=306615 DW350_RS16430 WP_115719974.1 3464852..3466090(-) (pilC) [Gallaecimonas mangrovi strain HK-28]
MATATKRKVDTQKLEIFTWKGLNRRGEKVQGEMTGARINDIKAQLRSQGITPKEVRRKPKSLFSFGQKVEAADIAAVTRQ
LATMLASGVPLVQSLDIIAKGYKKDAVREMMVKISSDVQGGTLLSEALGKYPILFDSLYRDLVAAGEHSGAMETMFDRIA
TYKEKQEELKAKIKKALFYPSAIVFVAIVVTAILLIFVVPQFEDIFHSFGAELPAFTRLWISISHAVQNSWYVIVAVLIV
AGFAFRAAHRKSQDVRDKTDKFILRLPIVGSILHKASLARFARTLATTFAAGVPLIDGLASSAGASGNALYRDAVLKVRR
EVETGMQMNVAMRTTQVFPEMIIQMVLIGEESGSIDEMMSKVAQIYEREVDDAVDGLMSLLEPAIMIVLGPIIGGLVVAM
YLPIFQLGQVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=306615 DW350_RS16430 WP_115719974.1 3464852..3466090(-) (pilC) [Gallaecimonas mangrovi strain HK-28]
ATGGCAACTGCAACAAAAAGAAAGGTTGATACCCAAAAGCTGGAAATTTTCACCTGGAAAGGACTCAATCGCCGCGGAGA
AAAAGTCCAAGGGGAAATGACAGGTGCCCGAATTAACGATATTAAGGCGCAGTTACGGTCCCAGGGTATAACCCCAAAGG
AAGTAAGGCGAAAACCCAAGTCGCTTTTTTCGTTTGGTCAAAAAGTTGAAGCGGCAGACATTGCGGCGGTAACACGTCAG
CTGGCCACCATGCTGGCGTCCGGTGTGCCTTTGGTGCAGTCATTGGACATTATTGCCAAAGGCTATAAAAAAGACGCTGT
CAGGGAGATGATGGTAAAAATCAGCTCTGATGTGCAAGGCGGCACCTTACTTTCAGAAGCGCTAGGTAAATACCCCATTT
TGTTTGATTCCCTTTATCGCGATTTAGTGGCGGCCGGTGAACATTCTGGGGCCATGGAAACCATGTTTGACCGCATCGCC
ACCTACAAAGAAAAGCAAGAAGAGTTAAAAGCCAAGATTAAAAAGGCACTGTTTTATCCTTCCGCCATCGTTTTTGTGGC
GATAGTGGTAACGGCAATATTGCTGATTTTTGTGGTACCGCAATTTGAAGATATTTTTCATTCTTTTGGCGCTGAATTAC
CGGCCTTTACCCGCCTTTGGATCAGTATTTCCCACGCCGTACAAAACTCTTGGTATGTCATCGTTGCTGTACTTATTGTG
GCGGGCTTTGCGTTTCGAGCGGCGCACCGAAAGTCGCAAGATGTAAGGGATAAAACAGACAAATTTATTCTGCGCCTGCC
TATTGTTGGCTCGATTTTGCATAAGGCCTCGTTGGCGCGTTTTGCCCGGACCTTGGCAACCACCTTTGCGGCGGGGGTGC
CGTTGATAGACGGGTTGGCGTCCAGCGCCGGCGCCTCCGGTAACGCCCTTTATCGTGATGCGGTATTAAAGGTGCGCCGA
GAGGTGGAAACCGGCATGCAAATGAATGTGGCCATGCGCACCACCCAGGTGTTTCCTGAAATGATTATTCAGATGGTGCT
TATTGGTGAAGAATCAGGCTCTATCGATGAAATGATGTCAAAGGTGGCGCAAATTTATGAGCGCGAAGTGGATGACGCCG
TTGACGGACTGATGAGTCTGCTAGAGCCCGCCATTATGATTGTGCTTGGGCCTATCATCGGTGGCTTGGTCGTGGCAATG
TATCTTCCTATCTTCCAGTTGGGACAAGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.639

96.845

0.539
  pilC Acinetobacter baylyi ADP1

52.357

97.816

0.512
  pilC Acinetobacter baumannii D1279779

51.244

97.573

0.5
  pilC Legionella pneumophila strain ERS1305867

50.124

97.816

0.49
  pilC Vibrio cholerae strain A1552

44.743

99.272

0.444
  pilC Vibrio campbellii strain DS40M4

41.481

98.301

0.408
  pilG Neisseria meningitidis 44/76-A

41.235

98.301

0.405
  pilG Neisseria gonorrhoeae MS11

41.045

97.573

0.4

Multiple sequence alignment