Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DWF74_RS11080 Genome accession   NZ_CP031396
Coordinates   2504002..2505219 (+) Length   405 a.a.
NCBI ID   WP_115580956.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FD6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499002..2510219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWF74_RS11065 (DWF74_11065) - 2499660..2502578 (+) 2919 WP_102865480.1 DUF748 domain-containing protein -
  DWF74_RS11070 (DWF74_11070) - 2502764..2503120 (-) 357 WP_102865479.1 BON domain-containing protein -
  DWF74_RS11075 (DWF74_11075) - 2503360..2503776 (-) 417 WP_102882235.1 pilin -
  DWF74_RS11080 (DWF74_11080) pilC 2504002..2505219 (+) 1218 WP_115580956.1 type II secretion system F family protein Machinery gene
  DWF74_RS11085 (DWF74_11085) pilD 2505222..2506094 (+) 873 WP_115580957.1 A24 family peptidase Machinery gene
  DWF74_RS11090 (DWF74_11090) coaE 2506091..2506714 (+) 624 WP_102865475.1 dephospho-CoA kinase -
  DWF74_RS11095 (DWF74_11095) yacG 2506711..2506914 (+) 204 WP_102865474.1 DNA gyrase inhibitor YacG -
  DWF74_RS11100 (DWF74_11100) - 2506934..2507149 (-) 216 WP_102865473.1 hypothetical protein -
  DWF74_RS11105 (DWF74_11105) - 2507213..2507902 (-) 690 WP_102865472.1 energy-coupling factor ABC transporter permease -
  DWF74_RS11110 (DWF74_11110) - 2507899..2508366 (-) 468 WP_102882239.1 FAD/FMN-containing dehydrogenase -
  DWF74_RS11115 (DWF74_11115) - 2508512..2509141 (+) 630 WP_102882240.1 DUF1780 domain-containing protein -
  DWF74_RS11120 (DWF74_11120) - 2509330..2509503 (+) 174 WP_043274580.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44268.04 Da        Isoelectric Point: 10.8183

>NTDB_id=306533 DWF74_RS11080 WP_115580956.1 2504002..2505219(+) (pilC) [Pseudomonas protegens strain FD6]
MAVKAPVASVYLWQGTDGQGHKLAGELSAANPALIRAQLRRQGITPTRVRRKPRAWLRSGQRIKAREIALFTRQLATLMQ
AGVPLLQAFEIIAESFVQPLMRQLLASLKRDIEAGSSLATALRRHPRHFDELYCNLVEAGEQSGALDTLLERVATHREKS
ENLKARVKKAMVYPVAVIGVAVLVSSILLIKVVPQFQSLFAGFNAQLPLLTQWVITLSHVIQNHGGWLLSAGLLMGVGIR
QAYRRSERLRDRVDQGLLRLPLAGPLLYKAAVARYARTLATTFAAGVPLVQALDSVAGASGNKVFRQAVERIRQQVASGM
QLNFAMRASGVFPTMAIQMTAIGEESGMLDHLLEKVAAHYEVEVDHLVDSLTSLMEPLIMVILGSIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=306533 DWF74_RS11080 WP_115580956.1 2504002..2505219(+) (pilC) [Pseudomonas protegens strain FD6]
ATGGCGGTAAAAGCACCTGTGGCCAGCGTCTATCTCTGGCAAGGCACCGACGGCCAGGGCCACAAGTTGGCCGGCGAGCT
GAGCGCTGCAAACCCGGCGCTGATCCGAGCTCAGCTGCGCAGGCAAGGCATCACTCCAACCCGGGTACGCCGCAAGCCTA
GGGCCTGGCTCCGATCGGGCCAACGGATCAAGGCACGGGAGATCGCCCTGTTCACCCGGCAACTGGCAACCCTGATGCAG
GCCGGAGTGCCACTGCTGCAAGCCTTCGAAATCATTGCCGAGAGCTTCGTCCAACCGCTGATGCGCCAACTGCTGGCCAG
CCTCAAACGCGACATCGAGGCAGGCTCCAGCCTGGCCACGGCGCTGCGCCGACATCCGCGCCACTTTGACGAGCTGTACT
GCAATCTGGTGGAGGCCGGCGAACAGTCCGGCGCCCTGGATACCCTGCTGGAACGGGTCGCCACCCATAGGGAAAAAAGC
GAGAACCTCAAGGCCCGGGTAAAAAAGGCCATGGTCTATCCCGTGGCGGTGATCGGCGTGGCCGTCCTGGTCAGCAGCAT
CCTACTGATCAAGGTAGTTCCCCAGTTCCAGAGCCTGTTCGCCGGGTTCAACGCCCAATTGCCGCTACTGACCCAATGGG
TCATCACCCTTTCCCATGTCATCCAGAACCACGGCGGATGGTTGCTCAGCGCCGGCCTGCTGATGGGAGTAGGGATCAGG
CAGGCTTATCGGCGCTCGGAGCGCCTGCGGGACCGTGTGGATCAGGGACTGCTACGCCTGCCCTTGGCCGGCCCGCTGCT
GTACAAGGCCGCAGTGGCCCGCTACGCCCGTACGCTGGCCACCACCTTCGCGGCTGGCGTGCCTCTGGTCCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACAAGGTCTTCAGGCAAGCGGTGGAACGCATCCGCCAACAAGTGGCCAGTGGCATG
CAACTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCTACTATGGCGATCCAGATGACCGCCATCGGTGAAGAATCCGG
AATGCTGGATCATCTGCTGGAAAAAGTCGCAGCACATTATGAGGTCGAGGTGGACCACCTGGTCGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTCATCCTGGGCAGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCACAGCGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.272

100

0.583
  pilC Acinetobacter baylyi ADP1

54.523

100

0.551
  pilC Acinetobacter baumannii D1279779

53.186

100

0.536
  pilC Legionella pneumophila strain ERS1305867

48.9

100

0.494
  pilG Neisseria meningitidis 44/76-A

42.356

98.519

0.417
  pilG Neisseria gonorrhoeae MS11

42.569

98.025

0.417
  pilC Vibrio campbellii strain DS40M4

41.791

99.259

0.415
  pilC Vibrio cholerae strain A1552

42.857

96.79

0.415
  pilC Thermus thermophilus HB27

38

98.765

0.375

Multiple sequence alignment