Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   CCO2228_RS05950 Genome accession   NZ_CP035927
Coordinates   1164255..1165595 (-) Length   446 a.a.
NCBI ID   WP_002777369.1    Uniprot ID   A0ABN0EPA8
Organism   Campylobacter coli strain RM2228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159255..1170595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS05925 (CCO2228_1156) - 1159303..1160073 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CCO2228_RS05930 (CCO2228_1157) metE 1160096..1162360 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  CCO2228_RS05935 (CCO2228_1158) metF 1162370..1163218 (+) 849 WP_002777362.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  CCO2228_RS05940 (CCO2228_1159) - 1163228..1163428 (-) 201 WP_002777366.1 hypothetical protein -
  CCO2228_RS05945 (CCO2228_1160) - 1163425..1164105 (-) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  CCO2228_RS05950 (CCO2228_1161) radA/sms 1164255..1165595 (-) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  CCO2228_RS05955 (CCO2228_1162) - 1165731..1166586 (+) 856 Protein_1155 carbon-nitrogen hydrolase family protein -
  CCO2228_RS05960 (CCO2228_1163) - 1166589..1167470 (+) 882 WP_002777372.1 polysaccharide deacetylase -
  CCO2228_RS05965 (CCO2228_1164) - 1167512..1167847 (+) 336 WP_002777373.1 hypothetical protein -
  CCO2228_RS05970 (CCO2228_1165) - 1167840..1168784 (+) 945 WP_002777375.1 GTP-binding protein -
  CCO2228_RS05975 (CCO2228_1166) pilA 1168781..1169647 (-) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  CCO2228_RS05980 (CCO2228_1167) - 1169647..1170204 (-) 558 WP_002777379.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49120.03 Da        Isoelectric Point: 6.9145

>NTDB_id=306533 CCO2228_RS05950 WP_002777369.1 1164255..1165595(-) (radA/sms) [Campylobacter coli strain RM2228]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=306533 CCO2228_RS05950 WP_002777369.1 1164255..1165595(-) (radA/sms) [Campylobacter coli strain RM2228]
ATGGCTAAAAATAAAATTCTTTTTGAATGCCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGCGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAACAAAATTGCTTCAGCAGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43

Multiple sequence alignment