Detailed information NTG0306534

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DWF74_RS11085
• Genome accession: NZ_CP031396
• Coordinates: 2505222..2506094 (+)
• Length: 290 a.a.
• NCBI ID: WP_115580957.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain FD6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2500222..2511094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DWF74_RS11070 (DWF74_11070)	-	2502764..2503120 (-)	357	WP_102865479.1	BON domain-containing protein	-
DWF74_RS11075 (DWF74_11075)	-	2503360..2503776 (-)	417	WP_102882235.1	pilin	-
DWF74_RS11080 (DWF74_11080)	pilC	2504002..2505219 (+)	1218	WP_115580956.1	type II secretion system F family protein	Machinery gene
DWF74_RS11085 (DWF74_11085)	pilD	2505222..2506094 (+)	873	WP_115580957.1	A24 family peptidase	Machinery gene
DWF74_RS11090 (DWF74_11090)	coaE	2506091..2506714 (+)	624	WP_102865475.1	dephospho-CoA kinase	-
DWF74_RS11095 (DWF74_11095)	yacG	2506711..2506914 (+)	204	WP_102865474.1	DNA gyrase inhibitor YacG	-
DWF74_RS11100 (DWF74_11100)	-	2506934..2507149 (-)	216	WP_102865473.1	hypothetical protein	-
DWF74_RS11105 (DWF74_11105)	-	2507213..2507902 (-)	690	WP_102865472.1	energy-coupling factor ABC transporter permease	-
DWF74_RS11110 (DWF74_11110)	-	2507899..2508366 (-)	468	WP_102882239.1	FAD/FMN-containing dehydrogenase	-
DWF74_RS11115 (DWF74_11115)	-	2508512..2509141 (+)	630	WP_102882240.1	DUF1780 domain-containing protein	-
DWF74_RS11120 (DWF74_11120)	-	2509330..2509503 (+)	174	WP_043274580.1	DUF3094 family protein	-
DWF74_RS11125 (DWF74_11125)	-	2509564..2510862 (+)	1299	WP_115580958.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32181.46 Da
• Isoelectric Point: 7.6850

>NTDB_id=306534 DWF74_RS11085 WP_115580957.1 2505222..2506094(+) (pilD) [Pseudomonas protegens strain FD6]
MSLTEAMTLYPLAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPVAAPYNLLLPHSQCPHCAQPIR
PWQNIPLLSYLWLRGRCAHCRTVISRRYPLTELACGLISAYVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFEVLVSLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=306534 DWF74_RS11085 WP_115580957.1 2505222..2506094(+) (pilD) [Pseudomonas protegens strain FD6]
ATGTCCTTGACTGAAGCCATGACCCTTTACCCCCTGGCCTTCGTGACTGCGGCCCTGGTACTAGGGCTGCTCGTAGGCAG
TTTTCTGAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGCGATTGGCGGGCTCAAGCCCACGAAGTGCTGGGAC
TGCCCCCGGAGCCTGTGGCGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAATGCCCCCACTGCGCACAACCGATCCGC
CCCTGGCAAAACATTCCCCTGCTCAGCTATCTGTGGCTGCGGGGTCGTTGCGCCCACTGCAGGACCGTCATCAGCCGGCG
CTACCCACTAACCGAACTGGCTTGCGGGCTGATCTCGGCGTACGTCGCCTGGCACTTCGGTTTTGGCTGGCCCGCGGGCC
TGCTGCTGATCCTCAGTTGGGGGTTACTGGCCATGAGCCTGATCGATGCCGATCACCAACTGCTGCCAGACGTGCTGGTG
TTGCCACTGCTGTGGCTGGGACTGATTGCCAACAGCTTCGAGGTACTGGTGAGCCTGGAGGACGCCCTGTGGGGCGCGGT
ACTCGGCTATCTGTGCCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGCTAGCGATGCTTGGCGCCTGGGGCGGCTGGCAAATCCTGCCGCTGACCTTGCTCCTGTCCTCTCTGGTGGGA
GCGATTCTCGGCACTGTCATGCTGCGCCTGAACCGGGCCAAGACCTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.386	98.276	0.534
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	49.63	93.103	0.462