Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   DV163_RS07005 Genome accession   NZ_CP031330
Coordinates   1183180..1184412 (+) Length   410 a.a.
NCBI ID   WP_115437302.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1178180..1189412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS06985 fabI 1179209..1179994 (-) 786 WP_002223367.1 enoyl-ACP reductase FabI -
  DV163_RS06990 dapD 1180149..1180970 (-) 822 WP_002216408.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  DV163_RS06995 - 1180980..1181210 (-) 231 WP_009348191.1 hypothetical protein -
  DV163_RS07000 pgi 1181180..1182823 (-) 1644 WP_002224874.1 glucose-6-phosphate isomerase -
  DV163_RS07005 pilG 1183180..1184412 (+) 1233 WP_115437302.1 type 4 pilus assembly protein PilG Machinery gene
  DV163_RS07010 pilD 1184486..1185346 (+) 861 WP_003710975.1 A24 family peptidase Machinery gene
  DV163_RS07015 coaE 1185348..1185980 (+) 633 WP_002224873.1 dephospho-CoA kinase -
  DV163_RS07020 - 1185973..1186182 (+) 210 WP_002224872.1 DNA gyrase inhibitor YacG -
  DV163_RS07025 pilF 1186267..1187943 (-) 1677 WP_002221967.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV163_RS07040 - 1188355..1188831 (-) 477 WP_079254847.1 DUF441 domain-containing protein -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45245.24 Da        Isoelectric Point: 9.9273

>NTDB_id=305835 DV163_RS07005 WP_115437302.1 1183180..1184412(+) (pilG) [Neisseria meningitidis strain M21955]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDALLLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMVQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=305835 DV163_RS07005 WP_115437302.1 1183180..1184412(+) (pilG) [Neisseria meningitidis strain M21955]
ATGGCTAAAAACGGAGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCCGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCGCGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATCACCGTTTTCACCCGCCAGCTGTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCGAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAACCACCCAAAATATTTCG
ACCGCTTCTACTGCAATCTGGTTGCGGCGGGCGAAACGGGCGGCGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAAGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCACTGACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCGCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTCGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCCTGCTGCTGCGTATGCCGATTTT
CGGAGACATCGTCCGTAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCGACACTGATTGCGGCAGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGCCTGTCCATGACTTCCGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGGTGCAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTATGAAGACGAGGTGGACAATGCGGTCGGTC
GGCTGTCCGCTATGATGGAGCCGATCATTATCGTGATTTTAGGCTTGGTCATCGGTACGCTTCTGGTCGCTATGTATCTG
CCGCTGTTTAATTTGGGCAACGTGGTCGGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

98.778

99.756

0.985

  pilG Neisseria meningitidis 44/76-A

97.805

100

0.978

  pilC Acinetobacter baumannii D1279779

47.739

97.073

0.463

  pilC Acinetobacter baylyi ADP1

45.865

97.317

0.446

  pilC Pseudomonas stutzeri DSM 10701

45.409

98.293

0.446

  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434

  pilC Vibrio cholerae strain A1552

41.191

98.293

0.405

  pilC Vibrio campbellii strain DS40M4

39.066

99.268

0.388


Multiple sequence alignment