Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EXE32_RS15145 Genome accession   NZ_CP035850
Coordinates   3168267..3169694 (-) Length   475 a.a.
NCBI ID   WP_000980631.1    Uniprot ID   -
Organism   Escherichia coli strain TW10590     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3163267..3174694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE32_RS15115 yeeZ 3163322..3164146 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  EXE32_RS15120 yeeY 3164192..3165121 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  EXE32_RS15125 yoeI 3165336..3165398 (+) 63 WP_010723108.1 membrane protein YoeI -
  EXE32_RS15130 plaP 3165388..3166746 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EXE32_RS15135 tsuA 3166925..3167983 (+) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  EXE32_RS15140 tsuB 3167997..3168224 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EXE32_RS15145 sbcB 3168267..3169694 (-) 1428 WP_000980631.1 exodeoxyribonuclease I Machinery gene
  EXE32_RS15150 dacD 3169903..3171069 (+) 1167 WP_001356285.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EXE32_RS15155 - 3171267..3171785 (+) 519 WP_000115885.1 ClbS/DfsB family four-helix bundle protein -
  EXE32_RS15160 - 3171804..3173024 (+) 1221 WP_000343765.1 ISL3-like element ISEc53 family transposase -
  EXE32_RS15165 sbmC 3173081..3173553 (+) 473 Protein_2962 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54476.75 Da        Isoelectric Point: 5.4720

>NTDB_id=305836 EXE32_RS15145 WP_000980631.1 3168267..3169694(-) (sbcB) [Escherichia coli strain TW10590]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQSGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDIPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=305836 EXE32_RS15145 WP_000980631.1 3168267..3169694(-) (sbcB) [Escherichia coli strain TW10590]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGTCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTAATGGCGTTGATTGATATTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGTAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATAAATAAATGCCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTACGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment