Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXE32_RS15335 Genome accession   NZ_CP035850
Coordinates   3200469..3200945 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain TW10590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3195469..3205945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE32_RS15300 - 3196587..3197326 (-) 740 Protein_2989 IS3-like element IS629 family transposase -
  EXE32_RS15305 - 3197376..3198740 (+) 1365 Protein_2990 IS66-like element ISEc23 family transposase -
  EXE32_RS15310 - 3198861..3198941 (-) 81 Protein_2991 hypothetical protein -
  EXE32_RS15315 - 3199041..3199193 (-) 153 Protein_2992 DUF5983 family protein -
  EXE32_RS15320 - 3199190..3199564 (-) 375 WP_000854762.1 TA system toxin CbtA family protein -
  EXE32_RS15325 - 3199654..3200022 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXE32_RS15330 yeeT 3200185..3200406 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  EXE32_RS15335 radC 3200469..3200945 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EXE32_RS15340 - 3200961..3201158 (-) 198 Protein_2997 antirestriction protein -
  EXE32_RS15345 - 3201186..3202757 (-) 1572 WP_000381359.1 IS66-like element ISCro1 family transposase -
  EXE32_RS15350 tnpB 3202777..3203124 (-) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  EXE32_RS15355 tnpA 3203124..3203801 (-) 678 WP_001339397.1 IS66-like element accessory protein TnpA -
  EXE32_RS15360 - 3203857..3204141 (-) 285 Protein_3001 antirestriction protein -
  EXE32_RS15365 - 3204483..3205301 (-) 819 WP_001234719.1 DUF932 domain-containing protein -
  EXE32_RS15370 - 3205419..3205614 (-) 196 Protein_3003 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=305837 EXE32_RS15335 WP_001186774.1 3200469..3200945(-) (radC) [Escherichia coli strain TW10590]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305837 EXE32_RS15335 WP_001186774.1 3200469..3200945(-) (radC) [Escherichia coli strain TW10590]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment