Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   DV115_RS07310 Genome accession   NZ_CP031325
Coordinates   1307581..1308813 (-) Length   410 a.a.
NCBI ID   WP_003710974.1    Uniprot ID   E4ZBA3
Organism   Neisseria polysaccharea strain M18661     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1302581..1313813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS07275 - 1303265..1303711 (+) 447 WP_003750326.1 DUF441 domain-containing protein -
  DV115_RS07290 pilF 1304050..1305726 (+) 1677 WP_115437585.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV115_RS07295 - 1305811..1306020 (-) 210 WP_003710977.1 DNA gyrase inhibitor YacG -
  DV115_RS07300 coaE 1306013..1306645 (-) 633 WP_003750324.1 dephospho-CoA kinase -
  DV115_RS07305 pilD 1306647..1307507 (-) 861 WP_115437586.1 prepilin peptidase Machinery gene
  DV115_RS07310 pilG 1307581..1308813 (-) 1233 WP_003710974.1 type 4 pilus assembly protein PilG Machinery gene
  DV115_RS07315 - 1309055..1310374 (-) 1320 WP_025456642.1 MFS transporter -
  DV115_RS07320 pgi 1310692..1312335 (+) 1644 WP_025456641.1 glucose-6-phosphate isomerase -
  DV115_RS07330 dapD 1312545..1313366 (+) 822 WP_003750316.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45246.23 Da        Isoelectric Point: 10.0085

>NTDB_id=305650 DV115_RS07310 WP_003710974.1 1307581..1308813(-) (pilG) [Neisseria polysaccharea strain M18661]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQVTRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRSNVEQGSTLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAVY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDALLLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMVQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=305650 DV115_RS07310 WP_003710974.1 1307581..1308813(-) (pilG) [Neisseria polysaccharea strain M18661]
ATGGCTAAAAATGGGGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCCGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCGCGCAAAAAACTCGCCAAACGCGGCATCCGCCCGC
TGCAGGTTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATTACCGTCTTTACCCGCCAGCTGTCC
ACTATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGCAGCAATGTGGAACAGGGCAGCACGTTGAGCCGCGCATTCTCGAACCACCCTAAATATTTCG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGCGTGTTGGAAAGCCTGTTGGACAAATTGGCAGTCTAT
AAAGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCGCTGACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAGGTTTACGCCAATATGGGCGCGGAGCTTCCCGCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTCGGCTTTGCCATA
TACGGCTTCCTCAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCCTGCTGCTGCGTATGCCGATTTT
CGGAGACATCGTCCGTAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCGACGCTGATTGCGGCAGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGCCTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGGTGCAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTATGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATCATTATCGTGATTTTGGGCTTGGTCATCGGTACGCTTCTGGTCGCTATGTATCTG
CCGCTGTTTAATTTGGGCAACGTGGTCGGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB E4ZBA3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

97.8

99.756

0.976

  pilG Neisseria meningitidis 44/76-A

97.066

99.756

0.968

  pilC Acinetobacter baumannii D1279779

47.487

97.073

0.461

  pilC Acinetobacter baylyi ADP1

46.115

97.317

0.449

  pilC Legionella pneumophila strain ERS1305867

45.34

96.829

0.439

  pilC Pseudomonas stutzeri DSM 10701

44.527

98.049

0.437

  pilC Vibrio cholerae strain A1552

40.943

98.293

0.402

  pilC Vibrio campbellii strain DS40M4

39.066

99.268

0.388


Multiple sequence alignment