Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV115_RS07305 Genome accession   NZ_CP031325
Coordinates   1306647..1307507 (-) Length   286 a.a.
NCBI ID   WP_115437586.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301647..1312507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS07260 rplU 1301755..1302063 (-) 309 WP_002216394.1 50S ribosomal protein L21 -
  DV115_RS07270 ispB 1302287..1303261 (+) 975 WP_003750327.1 octaprenyl diphosphate synthase -
  DV115_RS07275 - 1303265..1303711 (+) 447 WP_003750326.1 DUF441 domain-containing protein -
  DV115_RS07290 pilF 1304050..1305726 (+) 1677 WP_115437585.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV115_RS07295 - 1305811..1306020 (-) 210 WP_003710977.1 DNA gyrase inhibitor YacG -
  DV115_RS07300 coaE 1306013..1306645 (-) 633 WP_003750324.1 dephospho-CoA kinase -
  DV115_RS07305 pilD 1306647..1307507 (-) 861 WP_115437586.1 prepilin peptidase Machinery gene
  DV115_RS07310 pilG 1307581..1308813 (-) 1233 WP_003710974.1 type 4 pilus assembly protein PilG Machinery gene
  DV115_RS07315 - 1309055..1310374 (-) 1320 WP_025456642.1 MFS transporter -
  DV115_RS07320 pgi 1310692..1312335 (+) 1644 WP_025456641.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31271.38 Da        Isoelectric Point: 8.7141

>NTDB_id=305649 DV115_RS07305 WP_115437586.1 1306647..1307507(-) (pilD) [Neisseria polysaccharea strain M18661]
MFALSILPPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLVLTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide


Download         Length: 861 bp        

>NTDB_id=305649 DV115_RS07305 WP_115437586.1 1306647..1307507(-) (pilD) [Neisseria polysaccharea strain M18661]
ATGTTTGCTTTGTCTATACTGCCTCCGTTTGCCGTACCTTTGGCAGCGGTGTTGGGACTGCTGGTCGGCAGTTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTGATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGAGGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGCCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGAT
TGGTACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACACTGCCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCATTATGGCTCTTATGTGCGGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCAGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

97.193

99.65

0.969
  pilD Vibrio cholerae strain A1552

46.377

96.503

0.448
  pilD Acinetobacter baumannii D1279779

48.485

92.308

0.448
  pilD Acinetobacter nosocomialis M2

48.485

92.308

0.448
  pilD Vibrio campbellii strain DS40M4

44.599

100

0.448

Multiple sequence alignment