Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA02_RS12200 Genome accession   NZ_CP035841
Coordinates   2501466..2502134 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain TW10722     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2496466..2507134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS12170 yicC 2496485..2497348 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  EXA02_RS12175 rph 2497475..2498191 (+) 717 WP_001247093.1 ribonuclease PH -
  EXA02_RS12180 pyrE 2498257..2498898 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EXA02_RS12185 slmA 2498935..2499531 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXA02_RS12190 dut 2499638..2500096 (-) 459 WP_000976070.1 dUTP diphosphatase -
  EXA02_RS12195 coaBC 2500074..2501294 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXA02_RS12200 radC 2501466..2502134 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  EXA02_RS12205 rpmB 2502351..2502587 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXA02_RS12210 rpmG 2502608..2502775 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXA02_RS12215 mutM 2502873..2503682 (+) 810 WP_001114535.1 DNA-formamidopyrimidine glycosylase -
  EXA02_RS12220 coaD 2503721..2504200 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EXA02_RS12225 waaA 2504208..2505485 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXA02_RS12230 rfaQ 2505898..2506956 (+) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=305648 EXA02_RS12200 WP_001298959.1 2501466..2502134(+) (radC) [Escherichia coli strain TW10722]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305648 EXA02_RS12200 WP_001298959.1 2501466..2502134(+) (radC) [Escherichia coli strain TW10722]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment