Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | DWB98_RS06615 | Genome accession | NZ_CP031275 |
| Coordinates | 1388157..1388474 (+) | Length | 105 a.a. |
| NCBI ID | WP_029377192.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1383157..1393474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWB98_RS06585 (DWB98_06595) | - | 1383509..1383709 (+) | 201 | WP_107542787.1 | YqgQ family protein | - |
| DWB98_RS06590 (DWB98_06600) | - | 1384091..1385077 (+) | 987 | WP_029377187.1 | glucokinase | - |
| DWB98_RS06595 (DWB98_06605) | - | 1385077..1385400 (+) | 324 | WP_042362616.1 | MTH1187 family thiamine-binding protein | - |
| DWB98_RS06600 (DWB98_06610) | - | 1385402..1386025 (+) | 624 | WP_042362617.1 | MBL fold metallo-hydrolase | - |
| DWB98_RS06605 (DWB98_06615) | comGA | 1386124..1387098 (+) | 975 | WP_107543212.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DWB98_RS06610 (DWB98_06620) | comGB | 1387070..1388137 (+) | 1068 | WP_107543211.1 | competence type IV pilus assembly protein ComGB | - |
| DWB98_RS06615 (DWB98_06625) | comGC | 1388157..1388474 (+) | 318 | WP_029377192.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DWB98_RS06620 (DWB98_06630) | - | 1388497..1388898 (+) | 402 | WP_261376951.1 | competence protein | - |
| DWB98_RS06625 (DWB98_06635) | - | 1388885..1389184 (+) | 300 | WP_107543122.1 | hypothetical protein | - |
| DWB98_RS06630 (DWB98_06640) | comGF | 1389156..1389599 (+) | 444 | WP_107543121.1 | competence type IV pilus minor pilin ComGF | - |
| DWB98_RS06640 (DWB98_06650) | - | 1389779..1390279 (+) | 501 | WP_042363549.1 | shikimate kinase | - |
| DWB98_RS06645 (DWB98_06655) | gcvT | 1390467..1391558 (+) | 1092 | WP_107543120.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| DWB98_RS06650 (DWB98_06660) | gcvPA | 1391576..1392928 (+) | 1353 | WP_042362625.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11788.86 Da Isoelectric Point: 8.4952
>NTDB_id=305358 DWB98_RS06615 WP_029377192.1 1388157..1388474(+) (comGC) [Staphylococcus xylosus strain]
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=305358 DWB98_RS06615 WP_029377192.1 1388157..1388474(+) (comGC) [Staphylococcus xylosus strain]
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTACTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGCTGTGAAGCGCAACTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGCTTGAAGTTCAATAAGAAGCCAACTACTATGGATGAACTCGTCAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGCAAGTCAGGCGCCTTAATATCTATAAATGATGGTGAAGCAGTTGCAAATTAA
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTACTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGCTGTGAAGCGCAACTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGCTTGAAGTTCAATAAGAAGCCAACTACTATGGATGAACTCGTCAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGCAAGTCAGGCGCCTTAATATCTATAAATGATGGTGAAGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
70.297 |
96.19 |
0.676 |
| comGC | Staphylococcus aureus MW2 |
70.297 |
96.19 |
0.676 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.296 |
100 |
0.476 |
| comGC/cglC | Streptococcus pneumoniae D39 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
39.623 |
100 |
0.4 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
40 |
100 |
0.4 |
| comGC/cglC | Streptococcus mitis SK321 |
41.667 |
91.429 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
89.524 |
0.371 |
| comYC | Streptococcus mutans UA140 |
49.351 |
73.333 |
0.362 |
| comYC | Streptococcus mutans UA159 |
49.351 |
73.333 |
0.362 |