Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   DV446_RS06875 Genome accession   NZ_CP031252
Coordinates   1350100..1351323 (-) Length   407 a.a.
NCBI ID   WP_049248630.1    Uniprot ID   A0A378TZM3
Organism   Neisseria elongata strain M15911     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345100..1356323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS06840 - 1345538..1346920 (+) 1383 WP_074894944.1 Na+/H+ antiporter family protein -
  DV446_RS06845 - 1346921..1347139 (+) 219 WP_003769492.1 SlyX family protein -
  DV446_RS06850 rpmE 1347274..1347492 (+) 219 WP_049248635.1 50S ribosomal protein L31 -
  DV446_RS06855 - 1347648..1347842 (-) 195 WP_049253000.1 DNA gyrase inhibitor YacG -
  DV446_RS06860 zapD 1347839..1348600 (-) 762 WP_074894942.1 cell division protein ZapD -
  DV446_RS06865 coaE 1348615..1349217 (-) 603 WP_074894940.1 dephospho-CoA kinase -
  DV446_RS06870 pilD 1349217..1350089 (-) 873 WP_074894938.1 prepilin peptidase Machinery gene
  DV446_RS06875 pilG 1350100..1351323 (-) 1224 WP_049248630.1 type II secretion system F family protein Machinery gene
  DV446_RS06880 pilF 1351348..1353027 (-) 1680 WP_074894936.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV446_RS06885 - 1353159..1354748 (-) 1590 WP_074894934.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44639.73 Da        Isoelectric Point: 9.8738

>NTDB_id=305023 DV446_RS06875 WP_049248630.1 1350100..1351323(-) (pilG) [Neisseria elongata strain M15911]
MKINKAKNEKGHRFTFEGKHTQSEQIVRGEVVATNEDEAKKKLLRRGIKPTRVTKVKATRKKRITQADITVFTRQLATMM
KAGLPLMQAFEIVARGHVNPSMTQLLMAIRSDVEQGSSMGAAFAKHPKYFDKFYCNLISAGEAGGVLEHLLDKLAVYKEK
TQSIKKKVKSALTYPIAVVAVAVILVIVMMMYVLPAFGKIYKDMGAELPGLTQMLMSASDFFVEYGWIVIIVLIGLVVGF
VHLHRNSPELQKRVDMLVLKMPIFGDIVRKATIARWARTTASLFAAGVPLVEALDSVAGASGNILYEEATISIKSQVNQG
MSLTSGMQNTGLFPNMVLQMAAIGEESGSLDDMLNKAAEFYEEEVDTAVSQLSSLMEPIIMVVLGSIIGTMLVAMYLPLF
NIGNVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=305023 DV446_RS06875 WP_049248630.1 1350100..1351323(-) (pilG) [Neisseria elongata strain M15911]
ATGAAGATAAATAAAGCAAAAAATGAAAAAGGGCATCGTTTTACTTTTGAAGGGAAACATACACAAAGTGAACAGATTGT
ACGTGGTGAAGTAGTTGCGACTAATGAGGATGAGGCGAAGAAAAAATTATTACGTAGAGGAATTAAACCTACTCGTGTGA
CTAAAGTAAAAGCCACCCGTAAGAAGCGAATTACTCAAGCAGATATTACGGTTTTTACTCGACAACTCGCTACTATGATG
AAGGCTGGATTGCCTTTAATGCAAGCTTTTGAGATTGTTGCTAGAGGGCATGTTAATCCTTCGATGACTCAGTTGTTGAT
GGCTATACGCAGCGATGTGGAGCAGGGGTCTTCGATGGGGGCTGCATTTGCAAAGCATCCCAAGTATTTTGATAAATTTT
ATTGTAACTTAATTTCTGCAGGTGAAGCTGGTGGTGTGTTAGAACATTTGTTAGATAAGCTCGCTGTATACAAAGAAAAA
ACTCAGTCCATCAAGAAAAAAGTTAAATCGGCTCTTACTTATCCTATAGCCGTTGTTGCAGTGGCGGTTATATTGGTTAT
TGTAATGATGATGTATGTCTTGCCTGCATTTGGTAAGATTTATAAAGATATGGGTGCTGAATTGCCAGGATTGACACAAA
TGTTAATGAGTGCATCAGATTTTTTTGTTGAATATGGCTGGATTGTAATTATTGTCTTAATAGGGTTAGTTGTTGGATTT
GTTCATTTACATCGAAATTCACCTGAGCTGCAGAAAAGGGTAGATATGCTAGTACTTAAAATGCCAATCTTCGGCGATAT
TGTACGAAAGGCCACTATTGCTAGATGGGCCCGGACGACAGCTAGTTTGTTTGCTGCAGGTGTTCCTTTAGTTGAGGCAT
TGGATTCAGTTGCTGGCGCTTCAGGTAATATTTTATATGAAGAGGCTACTATTTCAATTAAATCACAGGTAAATCAAGGT
ATGTCATTAACATCGGGGATGCAGAACACTGGCCTTTTCCCTAATATGGTCCTACAAATGGCAGCTATTGGTGAAGAGTC
TGGATCACTAGATGATATGCTAAATAAAGCAGCTGAATTTTATGAGGAAGAAGTAGATACTGCAGTTTCTCAATTATCCT
CTTTGATGGAACCTATCATAATGGTGGTTCTAGGAAGTATTATTGGTACTATGTTGGTTGCTATGTATTTACCTCTGTTC
AATATAGGCAATGTTATCGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TZM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

68.08

98.526

0.671
  pilG Neisseria meningitidis 44/76-A

67.332

98.526

0.663
  pilC Legionella pneumophila strain ERS1305867

47.607

97.543

0.464
  pilC Pseudomonas stutzeri DSM 10701

46.25

98.28

0.455
  pilC Acinetobacter baumannii D1279779

45.226

97.789

0.442
  pilC Acinetobacter baylyi ADP1

44.472

97.789

0.435
  pilC Vibrio cholerae strain A1552

38.191

97.789

0.373
  pilC Vibrio campbellii strain DS40M4

36.543

99.509

0.364

Multiple sequence alignment