Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DV130_RS00215 Genome accession   NZ_CP031248
Coordinates   37938..38408 (+) Length   156 a.a.
NCBI ID   WP_000609607.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 32938..43408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS00180 - 33222..33770 (-) 549 WP_000039646.1 NADPH-dependent FMN reductase -
  DV130_RS00190 - 34091..34579 (+) 489 WP_041171101.1 DUF5590 domain-containing protein -
  DV130_RS00195 - 34576..35763 (+) 1188 WP_114865118.1 pyridoxal phosphate-dependent aminotransferase -
  DV130_RS00200 - 35756..36121 (+) 366 WP_114865119.1 VOC family protein -
  DV130_RS00205 asnS 36137..37483 (+) 1347 WP_161801414.1 asparagine--tRNA ligase -
  DV130_RS00210 rpsF 37636..37926 (+) 291 WP_001151785.1 30S ribosomal protein S6 -
  DV130_RS00215 ssbA 37938..38408 (+) 471 WP_000609607.1 single-stranded DNA-binding protein SsbA Machinery gene
  DV130_RS00220 rpsR 38440..38679 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  DV130_RS00225 - 38974..40374 (+) 1401 WP_114865120.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DV130_RS00230 - 40376..40735 (+) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  DV130_RS00235 - 40789..41538 (+) 750 WP_114865121.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DV130_RS00240 - 41528..41827 (+) 300 WP_000349602.1 GIY-YIG nuclease family protein -
  DV130_RS00245 - 41898..42833 (+) 936 WP_114865122.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17351.21 Da        Isoelectric Point: 5.2065

>NTDB_id=304820 DV130_RS00215 WP_000609607.1 37938..38408(+) (ssbA) [Streptococcus pneumoniae strain M26365]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=304820 DV130_RS00215 WP_000609607.1 37938..38408(+) (ssbA) [Streptococcus pneumoniae strain M26365]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365

Multiple sequence alignment