Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DV129_RS00230 Genome accession   NZ_CP031247
Coordinates   39152..39622 (+) Length   156 a.a.
NCBI ID   WP_000609607.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 34152..44622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS00195 - 34436..34984 (-) 549 WP_000039617.1 NADPH-dependent FMN reductase -
  DV129_RS00205 - 35305..35793 (+) 489 WP_000747253.1 DUF5590 domain-containing protein -
  DV129_RS00210 - 35790..36977 (+) 1188 WP_000777782.1 pyridoxal phosphate-dependent aminotransferase -
  DV129_RS00215 - 36970..37335 (+) 366 WP_000565225.1 VOC family protein -
  DV129_RS00220 asnS 37351..38697 (+) 1347 WP_161801539.1 asparagine--tRNA ligase -
  DV129_RS00225 rpsF 38850..39140 (+) 291 WP_001151785.1 30S ribosomal protein S6 -
  DV129_RS00230 ssbA 39152..39622 (+) 471 WP_000609607.1 single-stranded DNA-binding protein SsbA Machinery gene
  DV129_RS00235 rpsR 39654..39893 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  DV129_RS00240 - 40188..41588 (+) 1401 WP_114865955.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DV129_RS00245 - 41590..41949 (+) 360 WP_000689594.1 S1 RNA-binding domain-containing protein -
  DV129_RS00250 - 42003..42752 (+) 750 WP_114865956.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DV129_RS00255 - 42742..43041 (+) 300 WP_000349602.1 GIY-YIG nuclease family protein -
  DV129_RS00260 - 43112..44047 (+) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17351.21 Da        Isoelectric Point: 5.2065

>NTDB_id=304743 DV129_RS00230 WP_000609607.1 39152..39622(+) (ssbA) [Streptococcus pneumoniae strain M23734]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=304743 DV129_RS00230 WP_000609607.1 39152..39622(+) (ssbA) [Streptococcus pneumoniae strain M23734]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365

Multiple sequence alignment