Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DV119_RS10405 Genome accession   NZ_CP031245
Coordinates   1933133..1933603 (-) Length   156 a.a.
NCBI ID   WP_050084733.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1928133..1938603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS10375 - 1928708..1929643 (-) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -
  DV119_RS10380 - 1929714..1930013 (-) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  DV119_RS10385 - 1930003..1930752 (-) 750 WP_000390784.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DV119_RS10390 - 1930806..1931165 (-) 360 WP_000689600.1 S1 RNA-binding domain-containing protein -
  DV119_RS10395 - 1931167..1932567 (-) 1401 WP_000339024.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DV119_RS10400 rpsR 1932862..1933101 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DV119_RS10405 ssbA 1933133..1933603 (-) 471 WP_050084733.1 single-stranded DNA-binding protein SsbA Machinery gene
  DV119_RS10410 rpsF 1933615..1933905 (-) 291 WP_001151785.1 30S ribosomal protein S6 -
  DV119_RS10415 asnS 1934058..1935401 (-) 1344 WP_000167151.1 asparagine--tRNA ligase -
  DV119_RS11405 - 1935420..1935785 (-) 366 WP_050084731.1 VOC family protein -
  DV119_RS10420 - 1935778..1936965 (-) 1188 WP_050221144.1 pyridoxal phosphate-dependent aminotransferase -
  DV119_RS10425 - 1936962..1937450 (-) 489 WP_000747253.1 DUF5590 domain-containing protein -
  DV119_RS10435 - 1937771..1938319 (+) 549 WP_000039618.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17324.19 Da        Isoelectric Point: 5.2065

>NTDB_id=304657 DV119_RS10405 WP_050084733.1 1933133..1933603(-) (ssbA) [Streptococcus pneumoniae strain M16808]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTASYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=304657 DV119_RS10405 WP_050084733.1 1933133..1933603(-) (ssbA) [Streptococcus pneumoniae strain M16808]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAGCTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365

Multiple sequence alignment