Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LCHO_RS02760 | Genome accession | NC_010524 |
| Coordinates | 594158..595384 (-) | Length | 408 a.a. |
| NCBI ID | WP_012345586.1 | Uniprot ID | B1XYU0 |
| Organism | Leptothrix cholodnii SP-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 589158..600384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCHO_RS02725 (Lcho_0542) | slmA | 589373..590017 (+) | 645 | WP_012345579.1 | nucleoid occlusion factor SlmA | - |
| LCHO_RS02730 (Lcho_0543) | - | 590059..590991 (+) | 933 | WP_012345580.1 | ATP-binding protein | - |
| LCHO_RS02735 (Lcho_0544) | - | 590984..591484 (+) | 501 | WP_012345581.1 | NUDIX domain-containing protein | - |
| LCHO_RS02740 (Lcho_0545) | - | 591501..591707 (-) | 207 | WP_012345582.1 | DNA gyrase inhibitor YacG | - |
| LCHO_RS02745 (Lcho_0546) | zapD | 591740..592495 (-) | 756 | WP_012345583.1 | cell division protein ZapD | - |
| LCHO_RS02750 (Lcho_0547) | coaE | 592576..593190 (-) | 615 | WP_012345584.1 | dephospho-CoA kinase | - |
| LCHO_RS02755 (Lcho_0548) | - | 593202..594149 (-) | 948 | WP_012345585.1 | prepilin peptidase | - |
| LCHO_RS02760 (Lcho_0549) | pilC | 594158..595384 (-) | 1227 | WP_012345586.1 | type II secretion system F family protein | Machinery gene |
| LCHO_RS02765 (Lcho_0550) | pilB | 595435..597159 (-) | 1725 | WP_012345587.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LCHO_RS02770 (Lcho_0551) | htpG | 597526..599430 (+) | 1905 | WP_012345588.1 | molecular chaperone HtpG | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44444.27 Da Isoelectric Point: 10.0127
>NTDB_id=30434 LCHO_RS02760 WP_012345586.1 594158..595384(-) (pilC) [Leptothrix cholodnii SP-6]
MATAAAVAAKKIKDFVFEWEGRDRNGKAVRGEMRAGGEAMVSASLRRQGIMVVKVKKRRISGGKSIKGKDIAVFTRQLAT
MLKAGVPLLQAFDIVARGSSNPRLTRMLTDIRGDVETGTSLSAAFRRHPLQFDALYCNLVEAGESAGILETLLDRLANYQ
EKTIELQNKIRSALIYPVAVLVVAFIVVAVIMIFVIPSFKDIFKSFGADLPLPTLIVIAMSEFFVQYWFAIFGGIGLAVY
MTIQSWRRSERMQMALDRFMLKVPIFGQLVHKAAVARWARTLSTMFAAGVPLVEALDSVGGAAGNAVFAQATEQIQRDVS
TGAALTSSMQATNIFPNMVLQMSSIGEESGSLDQMLSKVADFYEQEVDEAVKGLSTLMEPIIIVVLGTIIGGIVVSMYLP
IFKLGQVV
MATAAAVAAKKIKDFVFEWEGRDRNGKAVRGEMRAGGEAMVSASLRRQGIMVVKVKKRRISGGKSIKGKDIAVFTRQLAT
MLKAGVPLLQAFDIVARGSSNPRLTRMLTDIRGDVETGTSLSAAFRRHPLQFDALYCNLVEAGESAGILETLLDRLANYQ
EKTIELQNKIRSALIYPVAVLVVAFIVVAVIMIFVIPSFKDIFKSFGADLPLPTLIVIAMSEFFVQYWFAIFGGIGLAVY
MTIQSWRRSERMQMALDRFMLKVPIFGQLVHKAAVARWARTLSTMFAAGVPLVEALDSVGGAAGNAVFAQATEQIQRDVS
TGAALTSSMQATNIFPNMVLQMSSIGEESGSLDQMLSKVADFYEQEVDEAVKGLSTLMEPIIIVVLGTIIGGIVVSMYLP
IFKLGQVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=30434 LCHO_RS02760 WP_012345586.1 594158..595384(-) (pilC) [Leptothrix cholodnii SP-6]
ATGGCCACAGCAGCTGCGGTAGCGGCGAAGAAGATCAAGGACTTCGTCTTTGAGTGGGAGGGCCGTGACCGCAACGGCAA
GGCCGTGCGCGGCGAGATGCGCGCCGGCGGCGAGGCCATGGTCAGCGCCAGCCTGCGCCGCCAGGGCATCATGGTCGTCA
AGGTCAAGAAGCGCCGCATCTCGGGCGGCAAGTCGATCAAGGGCAAGGACATCGCGGTCTTCACGCGCCAGCTGGCCACC
ATGCTCAAAGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTCGCCCGCGGCAGCTCGAACCCGCGCCTGACGCGCAT
GCTGACCGACATCCGCGGCGACGTCGAGACCGGTACCAGCCTGTCGGCGGCCTTCCGCCGCCACCCGCTGCAGTTCGACG
CGCTGTACTGCAACCTGGTCGAGGCCGGCGAATCCGCCGGCATCCTGGAGACCCTGCTCGATCGCCTGGCCAACTACCAG
GAAAAGACCATCGAGCTGCAGAACAAGATCCGCTCGGCGCTGATCTATCCGGTGGCGGTGCTGGTGGTGGCGTTCATCGT
GGTCGCGGTGATCATGATCTTCGTGATCCCGTCGTTCAAGGACATCTTCAAGTCCTTCGGCGCCGACCTGCCGCTGCCCA
CGCTGATCGTGATCGCTATGTCGGAATTCTTCGTCCAGTACTGGTTCGCGATCTTCGGCGGCATCGGGCTGGCGGTCTAC
ATGACGATCCAGAGCTGGCGCCGCTCCGAACGCATGCAGATGGCGCTCGACCGCTTCATGCTCAAGGTGCCGATCTTCGG
CCAGCTGGTGCACAAGGCCGCGGTGGCGCGCTGGGCGCGCACGCTGTCGACCATGTTCGCCGCCGGCGTGCCGCTGGTCG
AGGCGCTCGATTCGGTCGGCGGCGCGGCCGGCAACGCGGTGTTCGCGCAGGCCACCGAGCAGATCCAGCGCGACGTGTCC
ACCGGCGCGGCGCTGACGTCCTCGATGCAGGCGACCAACATCTTCCCGAACATGGTGCTGCAGATGAGCTCGATCGGCGA
GGAATCGGGCTCGCTCGACCAGATGCTCAGCAAGGTAGCCGACTTCTACGAACAGGAGGTCGACGAGGCCGTCAAGGGCC
TGTCGACGCTGATGGAGCCGATCATCATCGTCGTGCTCGGCACCATCATCGGCGGCATCGTGGTCTCGATGTACCTGCCG
ATCTTCAAGCTGGGCCAGGTGGTCTGA
ATGGCCACAGCAGCTGCGGTAGCGGCGAAGAAGATCAAGGACTTCGTCTTTGAGTGGGAGGGCCGTGACCGCAACGGCAA
GGCCGTGCGCGGCGAGATGCGCGCCGGCGGCGAGGCCATGGTCAGCGCCAGCCTGCGCCGCCAGGGCATCATGGTCGTCA
AGGTCAAGAAGCGCCGCATCTCGGGCGGCAAGTCGATCAAGGGCAAGGACATCGCGGTCTTCACGCGCCAGCTGGCCACC
ATGCTCAAAGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTCGCCCGCGGCAGCTCGAACCCGCGCCTGACGCGCAT
GCTGACCGACATCCGCGGCGACGTCGAGACCGGTACCAGCCTGTCGGCGGCCTTCCGCCGCCACCCGCTGCAGTTCGACG
CGCTGTACTGCAACCTGGTCGAGGCCGGCGAATCCGCCGGCATCCTGGAGACCCTGCTCGATCGCCTGGCCAACTACCAG
GAAAAGACCATCGAGCTGCAGAACAAGATCCGCTCGGCGCTGATCTATCCGGTGGCGGTGCTGGTGGTGGCGTTCATCGT
GGTCGCGGTGATCATGATCTTCGTGATCCCGTCGTTCAAGGACATCTTCAAGTCCTTCGGCGCCGACCTGCCGCTGCCCA
CGCTGATCGTGATCGCTATGTCGGAATTCTTCGTCCAGTACTGGTTCGCGATCTTCGGCGGCATCGGGCTGGCGGTCTAC
ATGACGATCCAGAGCTGGCGCCGCTCCGAACGCATGCAGATGGCGCTCGACCGCTTCATGCTCAAGGTGCCGATCTTCGG
CCAGCTGGTGCACAAGGCCGCGGTGGCGCGCTGGGCGCGCACGCTGTCGACCATGTTCGCCGCCGGCGTGCCGCTGGTCG
AGGCGCTCGATTCGGTCGGCGGCGCGGCCGGCAACGCGGTGTTCGCGCAGGCCACCGAGCAGATCCAGCGCGACGTGTCC
ACCGGCGCGGCGCTGACGTCCTCGATGCAGGCGACCAACATCTTCCCGAACATGGTGCTGCAGATGAGCTCGATCGGCGA
GGAATCGGGCTCGCTCGACCAGATGCTCAGCAAGGTAGCCGACTTCTACGAACAGGAGGTCGACGAGGCCGTCAAGGGCC
TGTCGACGCTGATGGAGCCGATCATCATCGTCGTGCTCGGCACCATCATCGGCGGCATCGTGGTCTCGATGTACCTGCCG
ATCTTCAAGCTGGGCCAGGTGGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.58 |
99.265 |
0.532 |
| pilG | Neisseria gonorrhoeae MS11 |
52.868 |
98.284 |
0.52 |
| pilG | Neisseria meningitidis 44/76-A |
52.369 |
98.284 |
0.515 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.005 |
97.549 |
0.498 |
| pilC | Acinetobacter baylyi ADP1 |
49.02 |
100 |
0.49 |
| pilC | Acinetobacter baumannii D1279779 |
47.859 |
97.304 |
0.466 |
| pilC | Thermus thermophilus HB27 |
40.482 |
100 |
0.412 |
| pilC | Vibrio cholerae strain A1552 |
42.065 |
97.304 |
0.409 |
| pilC | Vibrio campbellii strain DS40M4 |
40.64 |
99.51 |
0.404 |