Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HYN46_RS16765 Genome accession   NZ_CP031222
Coordinates   3716290..3717516 (+) Length   408 a.a.
NCBI ID   WP_114900450.1    Uniprot ID   A0A345PAN3
Organism   Aquirhabdus parva strain HYN0046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3711290..3722516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS16730 (HYN46_16730) - 3711507..3712103 (-) 597 WP_114900445.1 ribosome assembly cofactor RimP -
  HYN46_RS16745 (HYN46_16745) secG 3712709..3713047 (-) 339 WP_114900446.1 preprotein translocase subunit SecG -
  HYN46_RS16750 (HYN46_16750) tpiA 3713064..3713870 (-) 807 WP_114900447.1 triose-phosphate isomerase -
  HYN46_RS16755 (HYN46_16755) - 3713982..3714290 (+) 309 WP_114900448.1 DUF1653 domain-containing protein -
  HYN46_RS16760 (HYN46_16760) pilB 3714416..3716125 (+) 1710 WP_114900449.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HYN46_RS16765 (HYN46_16765) pilC 3716290..3717516 (+) 1227 WP_114900450.1 type II secretion system F family protein Machinery gene
  HYN46_RS16770 (HYN46_16770) pilD 3717525..3718412 (+) 888 WP_407640809.1 prepilin peptidase Machinery gene
  HYN46_RS16775 (HYN46_16775) coaE 3718562..3719170 (+) 609 WP_114900452.1 dephospho-CoA kinase -
  HYN46_RS16780 (HYN46_16780) - 3719210..3720085 (+) 876 WP_114900453.1 PhzF family phenazine biosynthesis protein -
  HYN46_RS16785 (HYN46_16785) - 3720128..3720238 (+) 111 Protein_3298 4-carboxymuconolactone decarboxylase -
  HYN46_RS16790 (HYN46_16790) - 3720331..3720585 (-) 255 WP_114900454.1 pyocin activator PrtN family protein -
  HYN46_RS16795 (HYN46_16795) - 3720585..3720833 (-) 249 WP_114900455.1 hypothetical protein -
  HYN46_RS16800 (HYN46_16800) - 3720820..3721062 (-) 243 WP_114900456.1 hypothetical protein -
  HYN46_RS16805 (HYN46_16805) - 3721059..3721442 (-) 384 WP_114900457.1 hypothetical protein -
  HYN46_RS16810 (HYN46_16810) - 3721439..3722074 (-) 636 WP_162818277.1 DUF551 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44977.06 Da        Isoelectric Point: 9.6151

>NTDB_id=304179 HYN46_RS16765 WP_114900450.1 3716290..3717516(+) (pilC) [Aquirhabdus parva strain HYN0046]
MAVNKAQDIPNFLYEGTNRRGQKIKGEIPSKNMALAKAVLRKQGINVTSIRKKQKNLLEFISKKKVSAMDIAIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPSMREVVLGIKGEVEGGNTFAGALHKYPQYFDELFCSLVASGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPIAVIIVALVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQDYWWALIGIIALAVG
GFTESFKRSEKFRDFLDKLVLRLPIFGDLVYKAIIARFSRTLATTFAAGVPLIDALESTAGATNNVLYRKATMQIREDVS
TGQQLQFAMRSTDRFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=304179 HYN46_RS16765 WP_114900450.1 3716290..3717516(+) (pilC) [Aquirhabdus parva strain HYN0046]
ATGGCCGTCAATAAAGCACAGGATATTCCGAATTTTCTCTACGAGGGAACCAATCGGCGGGGTCAAAAAATCAAGGGGGA
AATCCCTAGTAAGAATATGGCTCTGGCGAAAGCAGTCTTGCGTAAGCAAGGGATCAATGTCACCAGCATCCGCAAGAAAC
AAAAGAATTTGCTTGAGTTCATTTCCAAGAAAAAAGTCTCGGCAATGGATATCGCGATTTTTACGCGTCAATTGGCGACG
ATGATGAAAGCTGGGGTACCCTTAGTTCAATCTTTTGAGATTGTAGCCGAAGGATTAGATAATCCATCAATGCGTGAAGT
TGTTTTGGGCATTAAAGGTGAAGTGGAGGGAGGGAATACCTTTGCAGGTGCCTTACATAAGTATCCCCAGTATTTTGATG
AGCTCTTTTGTTCACTGGTTGCTTCAGGCGAGCAATCTGGTGCATTAGAAACAATGCTAGATCGTGTAGCAATCTATAAA
GAAAAGAGTGAGTTGCTAAAGCAAAAGATCAAGAAAGCAATGAAATATCCTATCGCGGTTATTATCGTTGCATTAGTTGT
GACGATTATTCTGATGGTAAAGGTTGTGCCTGTGTTTCAAGATCTGTTTGCGTCTTTTGGTGCGGATTTGCCCGCATTTA
CGCAAATGGTAGTTAACATGTCCAAGTGGATGCAGGATTACTGGTGGGCATTGATAGGTATTATTGCGCTTGCCGTTGGA
GGATTTACAGAGTCGTTTAAGCGTAGCGAAAAATTCCGTGATTTTTTGGATAAGCTGGTACTGAGATTACCTATTTTTGG
TGATTTGGTTTACAAGGCGATTATTGCGCGCTTTAGTCGGACATTAGCCACAACTTTTGCGGCTGGGGTACCATTAATTG
ATGCATTAGAGTCAACTGCTGGTGCAACCAATAATGTTTTGTACCGCAAAGCAACCATGCAAATTCGTGAAGATGTTTCG
ACAGGGCAGCAACTGCAATTTGCAATGCGTTCGACGGATCGTTTTCCATCAATGGCCATACAAATGGTTGCGATTGGTGA
GGAGTCTGGTGCTTTGGATGCGATGCTTGATAAAGTAGCGACTCACTTTGAAAATGAAGTGGATAACGCAGTTGATGGTT
TAACATCGTTGATGGAACCTTTGATTATGGCCGTTTTGGGTGTGCTTGTTGGGGGGCTGGTGATCGCAATGTATCTGCCC
ATCTTCCAAATGGGCTCGGTGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345PAN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

81.863

100

0.819
  pilC Acinetobacter baylyi ADP1

77.206

100

0.772
  pilC Pseudomonas stutzeri DSM 10701

63.728

97.304

0.62
  pilC Legionella pneumophila strain ERS1305867

54.75

98.039

0.537
  pilG Neisseria gonorrhoeae MS11

45.297

99.02

0.449
  pilG Neisseria meningitidis 44/76-A

45.05

99.02

0.446
  pilC Vibrio campbellii strain DS40M4

42.998

99.755

0.429
  pilC Vibrio cholerae strain A1552

42.079

99.02

0.417

Multiple sequence alignment