Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HYN46_RS16770 Genome accession   NZ_CP031222
Coordinates   3717525..3718412 (+) Length   295 a.a.
NCBI ID   WP_407640809.1    Uniprot ID   -
Organism   Aquirhabdus parva strain HYN0046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3712525..3723412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS16745 (HYN46_16745) secG 3712709..3713047 (-) 339 WP_114900446.1 preprotein translocase subunit SecG -
  HYN46_RS16750 (HYN46_16750) tpiA 3713064..3713870 (-) 807 WP_114900447.1 triose-phosphate isomerase -
  HYN46_RS16755 (HYN46_16755) - 3713982..3714290 (+) 309 WP_114900448.1 DUF1653 domain-containing protein -
  HYN46_RS16760 (HYN46_16760) pilB 3714416..3716125 (+) 1710 WP_114900449.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HYN46_RS16765 (HYN46_16765) pilC 3716290..3717516 (+) 1227 WP_114900450.1 type II secretion system F family protein Machinery gene
  HYN46_RS16770 (HYN46_16770) pilD 3717525..3718412 (+) 888 WP_407640809.1 prepilin peptidase Machinery gene
  HYN46_RS16775 (HYN46_16775) coaE 3718562..3719170 (+) 609 WP_114900452.1 dephospho-CoA kinase -
  HYN46_RS16780 (HYN46_16780) - 3719210..3720085 (+) 876 WP_114900453.1 PhzF family phenazine biosynthesis protein -
  HYN46_RS16785 (HYN46_16785) - 3720128..3720238 (+) 111 Protein_3298 4-carboxymuconolactone decarboxylase -
  HYN46_RS16790 (HYN46_16790) - 3720331..3720585 (-) 255 WP_114900454.1 pyocin activator PrtN family protein -
  HYN46_RS16795 (HYN46_16795) - 3720585..3720833 (-) 249 WP_114900455.1 hypothetical protein -
  HYN46_RS16800 (HYN46_16800) - 3720820..3721062 (-) 243 WP_114900456.1 hypothetical protein -
  HYN46_RS16805 (HYN46_16805) - 3721059..3721442 (-) 384 WP_114900457.1 hypothetical protein -
  HYN46_RS16810 (HYN46_16810) - 3721439..3722074 (-) 636 WP_162818277.1 DUF551 domain-containing protein -
  HYN46_RS17445 - 3722071..3722619 (-) 549 WP_210009263.1 hypothetical protein -
  HYN46_RS16820 (HYN46_16820) - 3722622..3723026 (-) 405 WP_114900459.1 hypothetical protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32609.98 Da        Isoelectric Point: 7.3028

>NTDB_id=304180 HYN46_RS16770 WP_407640809.1 3717525..3718412(+) (pilD) [Aquirhabdus parva strain HYN0046]
MHDALDVIIALPWLSTLLIALLGLCVGSFLNVVIYRLPRIMESEWHQDCSVLLHDELQEQHRLDESKPPAKMTLSQPAST
CPSCGHKIRWYENIPLLSWLVLRGKCSACKTSIGIRYPLVELLTMLASLAVFLVFGPTLQMLCALGLTWALIALTGIDFD
TQYLPDRITLPLAAAGLLVNAQSLFVSPSQAIWGYVIGFLVLWIVYILFKVITGKEGMGYGDFKLLAALGAWLGPMQLPL
IILLSSFVGAIIGIILLKVRKENQPFAFGPYIAIAGWISLLWGNQLVTGYLGMYH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=304180 HYN46_RS16770 WP_407640809.1 3717525..3718412(+) (pilD) [Aquirhabdus parva strain HYN0046]
TTGCACGATGCTTTGGATGTGATTATTGCTTTACCTTGGCTCAGTACATTGCTGATCGCATTACTGGGGCTGTGCGTCGG
TAGTTTTTTGAATGTCGTGATTTACCGACTGCCGCGAATTATGGAAAGTGAGTGGCATCAAGATTGCTCCGTGCTCCTGC
ATGACGAGTTGCAAGAACAACATCGCTTGGATGAGTCTAAACCCCCAGCAAAAATGACACTGAGTCAACCTGCTTCCACG
TGTCCATCCTGCGGTCATAAAATCCGTTGGTATGAAAATATTCCGCTGCTGAGTTGGCTAGTACTCCGTGGTAAATGCAG
CGCATGTAAGACTTCTATTGGGATTCGCTACCCTTTGGTTGAACTATTAACCATGTTGGCGTCACTCGCTGTATTTTTAG
TCTTTGGTCCAACGTTACAAATGCTTTGTGCTTTAGGGCTTACTTGGGCATTGATTGCTTTGACAGGTATCGATTTTGAT
ACCCAATATTTACCCGATCGCATTACTTTACCGCTTGCTGCTGCAGGATTATTGGTCAATGCACAAAGTCTTTTTGTATC
GCCGAGTCAGGCGATTTGGGGCTATGTCATTGGTTTTTTGGTACTGTGGATTGTCTATATTCTATTTAAAGTGATCACAG
GTAAAGAAGGCATGGGCTACGGGGACTTTAAGTTACTGGCCGCGCTCGGTGCTTGGTTGGGTCCCATGCAATTGCCGTTG
ATTATCCTATTATCGTCCTTTGTGGGTGCCATCATTGGTATTATTTTACTTAAAGTACGTAAAGAGAATCAGCCATTTGC
ATTTGGACCCTATATTGCAATTGCTGGATGGATATCGCTACTGTGGGGCAATCAGTTGGTTACTGGATATTTAGGCATGT
ACCATTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-134)

Type IV leader peptidase family (Peptidase_A24)

(147-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

68.613

92.881

0.637
  pilD Acinetobacter baumannii D1279779

67.153

92.881

0.624
  pilD Vibrio cholerae strain A1552

51.724

98.305

0.508
  pilD Vibrio campbellii strain DS40M4

49.655

98.305

0.488
  pilD Neisseria gonorrhoeae MS11

48.276

88.475

0.427

Multiple sequence alignment