Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DS731_RS15390 Genome accession   NZ_CP031010
Coordinates   3463440..3464648 (+) Length   402 a.a.
NCBI ID   WP_119502162.1    Uniprot ID   -
Organism   Alteromonas sp. RKMC-009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458440..3469648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS731_RS15360 (DS731_15460) - 3458549..3459307 (-) 759 WP_119502156.1 GntR family transcriptional regulator -
  DS731_RS15365 (DS731_15465) ampE 3459714..3460580 (-) 867 WP_119502157.1 regulatory signaling modulator protein AmpE -
  DS731_RS15370 (DS731_15470) ampD 3460643..3461194 (-) 552 WP_119502158.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DS731_RS15375 (DS731_15475) - 3461340..3461816 (+) 477 WP_119502159.1 TIGR02281 family clan AA aspartic protease -
  DS731_RS15380 (DS731_15480) nadC 3461835..3462692 (+) 858 WP_119502160.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DS731_RS15385 (DS731_15485) - 3462935..3463369 (+) 435 WP_119502161.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DS731_RS15390 (DS731_15490) pilC 3463440..3464648 (+) 1209 WP_119502162.1 type II secretion system F family protein Machinery gene
  DS731_RS15395 (DS731_15495) pilD 3464762..3465640 (+) 879 WP_119502163.1 A24 family peptidase Machinery gene
  DS731_RS15400 (DS731_15500) coaE 3465637..3466254 (+) 618 WP_119502164.1 dephospho-CoA kinase -
  DS731_RS15405 (DS731_15505) zapD 3466332..3467084 (+) 753 WP_119502165.1 cell division protein ZapD -
  DS731_RS15410 (DS731_15510) yacG 3467124..3467354 (+) 231 WP_119503448.1 DNA gyrase inhibitor YacG -
  DS731_RS15415 (DS731_15515) - 3467428..3468300 (+) 873 WP_119502166.1 aspartoacylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43375.25 Da        Isoelectric Point: 9.8314

>NTDB_id=302803 DS731_RS15390 WP_119502162.1 3463440..3464648(+) (pilC) [Alteromonas sp. RKMC-009]
MSKVAVTFVWQGVDKHGSSRKGEISALTLSEAKNLLRKQGISARKVKKQAKPLFGGGQKITAQDICIISRQIATMLGAGV
TLIQSLDMIASGHDKASMRKLLGEISTEVKAGNPLSSALRKHPLYFDDLYCDLVKTGEQSGALETIYDRIATYKEKAEAL
KAKIKKAMFYPIAVLVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIGMGIAGAVFLFIRAL
RKSKRMQDKMDALTLKIPVVGEILKKAAVARFTRTLSTTFSAGVPLIGALDSAAGASGNAVYREAILFIKKEVAGGLQMN
TAMRATNVFPDMVSQMVAIGEESGSVDEMLAKIATIYEAEVDNMVDGLTSLLEPLIMAVLGVIIGGLIIAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=302803 DS731_RS15390 WP_119502162.1 3463440..3464648(+) (pilC) [Alteromonas sp. RKMC-009]
ATGAGTAAGGTAGCCGTAACATTTGTCTGGCAAGGGGTTGATAAACACGGAAGCTCGAGAAAAGGAGAAATATCTGCCCT
AACGTTGTCTGAAGCTAAAAACCTATTGCGAAAGCAGGGCATATCTGCAAGAAAAGTTAAGAAGCAGGCTAAACCACTCT
TTGGTGGCGGACAAAAAATTACTGCGCAGGATATATGTATAATATCGCGGCAAATAGCTACCATGCTGGGTGCCGGCGTC
ACCCTTATTCAATCACTGGATATGATCGCATCCGGCCATGACAAAGCCTCCATGCGCAAGTTACTTGGCGAAATTTCAAC
AGAAGTTAAAGCCGGTAATCCCCTGTCATCCGCATTACGGAAACATCCTCTTTATTTTGATGATTTGTACTGTGATCTGG
TGAAAACCGGTGAACAATCAGGTGCCCTGGAAACCATCTACGATCGGATCGCTACTTATAAAGAGAAAGCGGAAGCACTT
AAGGCTAAAATCAAAAAGGCGATGTTTTACCCCATCGCTGTTCTTGTTGTTGCGTTTATCGTAACAACAATCCTTTTGGT
ATTCGTGGTACCCCAGTTCGAAGAAATTTTCAGTAGTTTCGGGGCTGAGTTGCCGGCGTTTACCCAGTTTGTTCTGGCAA
TATCGCGGTTTGTTCAGGATTACGGCATTTTTATCGGGATGGGCATTGCCGGTGCAGTCTTCTTATTTATCCGGGCCTTG
AGAAAGTCTAAACGTATGCAGGATAAAATGGATGCACTGACACTGAAAATTCCGGTAGTGGGCGAAATCCTGAAAAAAGC
GGCGGTTGCCCGTTTCACCCGCACCCTGTCAACGACCTTTTCTGCCGGTGTTCCGTTAATTGGCGCTCTTGATTCTGCTG
CCGGTGCATCGGGCAATGCCGTGTACCGGGAAGCTATATTGTTCATTAAGAAAGAAGTCGCGGGCGGCTTACAAATGAAC
ACCGCCATGCGGGCTACTAACGTATTTCCCGACATGGTGTCGCAAATGGTGGCCATTGGTGAAGAATCCGGTTCCGTAGA
CGAAATGCTGGCAAAAATTGCTACGATTTATGAAGCGGAAGTAGATAATATGGTCGATGGTCTCACCAGCTTGCTGGAGC
CACTGATTATGGCTGTACTCGGGGTGATTATCGGCGGCCTGATTATAGCCATGTACCTGCCTATCTTCCAGATGGGTAAC
GTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.241

98.259

0.582
  pilC Acinetobacter baylyi ADP1

52.854

100

0.53
  pilC Acinetobacter baumannii D1279779

53.266

99.005

0.527
  pilC Legionella pneumophila strain ERS1305867

51.256

99.005

0.507
  pilC Vibrio cholerae strain A1552

44.975

99.005

0.445
  pilG Neisseria meningitidis 44/76-A

44.389

99.751

0.443
  pilC Vibrio campbellii strain DS40M4

44.059

100

0.443
  pilG Neisseria gonorrhoeae MS11

44.14

99.751

0.44
  pilC Thermus thermophilus HB27

38.25

99.502

0.381

Multiple sequence alignment