Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DS731_RS15395 | Genome accession | NZ_CP031010 |
| Coordinates | 3464762..3465640 (+) | Length | 292 a.a. |
| NCBI ID | WP_119502163.1 | Uniprot ID | A0A385MY61 |
| Organism | Alteromonas sp. RKMC-009 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3459762..3470640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DS731_RS15370 (DS731_15470) | ampD | 3460643..3461194 (-) | 552 | WP_119502158.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DS731_RS15375 (DS731_15475) | - | 3461340..3461816 (+) | 477 | WP_119502159.1 | TIGR02281 family clan AA aspartic protease | - |
| DS731_RS15380 (DS731_15480) | nadC | 3461835..3462692 (+) | 858 | WP_119502160.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| DS731_RS15385 (DS731_15485) | - | 3462935..3463369 (+) | 435 | WP_119502161.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| DS731_RS15390 (DS731_15490) | pilC | 3463440..3464648 (+) | 1209 | WP_119502162.1 | type II secretion system F family protein | Machinery gene |
| DS731_RS15395 (DS731_15495) | pilD | 3464762..3465640 (+) | 879 | WP_119502163.1 | A24 family peptidase | Machinery gene |
| DS731_RS15400 (DS731_15500) | coaE | 3465637..3466254 (+) | 618 | WP_119502164.1 | dephospho-CoA kinase | - |
| DS731_RS15405 (DS731_15505) | zapD | 3466332..3467084 (+) | 753 | WP_119502165.1 | cell division protein ZapD | - |
| DS731_RS15410 (DS731_15510) | yacG | 3467124..3467354 (+) | 231 | WP_119503448.1 | DNA gyrase inhibitor YacG | - |
| DS731_RS15415 (DS731_15515) | - | 3467428..3468300 (+) | 873 | WP_119502166.1 | aspartoacylase | - |
| DS731_RS15420 (DS731_15520) | - | 3468404..3469690 (-) | 1287 | WP_119502167.1 | methyl-accepting chemotaxis protein | - |
| DS731_RS15425 (DS731_15525) | - | 3469699..3470061 (-) | 363 | WP_119502168.1 | response regulator | - |
Sequence
Protein
Download Length: 292 a.a. Molecular weight: 32117.18 Da Isoelectric Point: 6.6250
>NTDB_id=302804 DS731_RS15395 WP_119502163.1 3464762..3465640(+) (pilD) [Alteromonas sp. RKMC-009]
MDAIISLMQQSLPVFLTTIFIFSLLVGSFLNVVIYRLPIMMERSWKAEYQSYFHENEQPAEQEPFNLVKPDSTCPHCHHK
IRAWENIPVISYLMLGGKCAGCKAGISIRYPLVELFTALVCTFTAWHFGATAQGIWAVLVVFILIALLFIDLDKMLLPDQ
LTLPLLWLGLILSTQSVFTGPVDAIIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAFTGWQGLPIIILLSSV
VGAVAGITLMIVQRSGKSLAIPFGPYLAVAGYLTLLYKAEIIDGYLAWVTGA
MDAIISLMQQSLPVFLTTIFIFSLLVGSFLNVVIYRLPIMMERSWKAEYQSYFHENEQPAEQEPFNLVKPDSTCPHCHHK
IRAWENIPVISYLMLGGKCAGCKAGISIRYPLVELFTALVCTFTAWHFGATAQGIWAVLVVFILIALLFIDLDKMLLPDQ
LTLPLLWLGLILSTQSVFTGPVDAIIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAFTGWQGLPIIILLSSV
VGAVAGITLMIVQRSGKSLAIPFGPYLAVAGYLTLLYKAEIIDGYLAWVTGA
Nucleotide
Download Length: 879 bp
>NTDB_id=302804 DS731_RS15395 WP_119502163.1 3464762..3465640(+) (pilD) [Alteromonas sp. RKMC-009]
ATGGACGCCATCATTTCATTAATGCAGCAGAGTCTGCCGGTGTTTCTCACCACCATCTTCATTTTCAGTTTGCTGGTTGG
CAGTTTTTTAAACGTTGTCATCTACCGTCTACCCATCATGATGGAGCGAAGCTGGAAAGCGGAATACCAAAGTTACTTTC
ACGAAAATGAACAGCCCGCAGAGCAGGAACCTTTCAATCTGGTAAAACCGGACAGCACCTGCCCTCACTGTCATCACAAA
ATCCGGGCATGGGAAAACATCCCTGTGATCAGCTATCTGATGCTGGGCGGTAAATGTGCAGGGTGTAAGGCTGGTATTTC
AATCCGTTATCCGCTGGTAGAACTGTTTACCGCACTGGTGTGTACATTTACAGCCTGGCATTTCGGTGCCACAGCGCAGG
GTATCTGGGCGGTATTGGTAGTCTTTATTCTTATTGCGCTGCTCTTTATCGACCTTGATAAAATGCTGCTGCCGGATCAA
TTAACATTGCCATTGCTATGGCTGGGACTGATCTTAAGTACTCAATCTGTCTTTACAGGTCCGGTGGACGCCATTATTGG
TGCTGCTGCGGGCTACTTGAGTTTGTGGTCGGTCTACTGGTTGTTTAAATTGCTCACCGGCAAGGAAGGAATGGGGTACG
GCGATTTTAAATTGCTCGCCGCATTAGGCGCCTTTACCGGATGGCAGGGCCTGCCCATTATTATTCTGCTTTCCTCCGTG
GTAGGAGCCGTGGCAGGTATCACACTGATGATTGTTCAGCGCTCCGGTAAATCTCTTGCGATCCCCTTTGGTCCGTATCT
CGCCGTCGCCGGTTATCTCACATTATTGTATAAGGCAGAGATCATAGATGGTTATCTTGCTTGGGTGACGGGTGCATGA
ATGGACGCCATCATTTCATTAATGCAGCAGAGTCTGCCGGTGTTTCTCACCACCATCTTCATTTTCAGTTTGCTGGTTGG
CAGTTTTTTAAACGTTGTCATCTACCGTCTACCCATCATGATGGAGCGAAGCTGGAAAGCGGAATACCAAAGTTACTTTC
ACGAAAATGAACAGCCCGCAGAGCAGGAACCTTTCAATCTGGTAAAACCGGACAGCACCTGCCCTCACTGTCATCACAAA
ATCCGGGCATGGGAAAACATCCCTGTGATCAGCTATCTGATGCTGGGCGGTAAATGTGCAGGGTGTAAGGCTGGTATTTC
AATCCGTTATCCGCTGGTAGAACTGTTTACCGCACTGGTGTGTACATTTACAGCCTGGCATTTCGGTGCCACAGCGCAGG
GTATCTGGGCGGTATTGGTAGTCTTTATTCTTATTGCGCTGCTCTTTATCGACCTTGATAAAATGCTGCTGCCGGATCAA
TTAACATTGCCATTGCTATGGCTGGGACTGATCTTAAGTACTCAATCTGTCTTTACAGGTCCGGTGGACGCCATTATTGG
TGCTGCTGCGGGCTACTTGAGTTTGTGGTCGGTCTACTGGTTGTTTAAATTGCTCACCGGCAAGGAAGGAATGGGGTACG
GCGATTTTAAATTGCTCGCCGCATTAGGCGCCTTTACCGGATGGCAGGGCCTGCCCATTATTATTCTGCTTTCCTCCGTG
GTAGGAGCCGTGGCAGGTATCACACTGATGATTGTTCAGCGCTCCGGTAAATCTCTTGCGATCCCCTTTGGTCCGTATCT
CGCCGTCGCCGGTTATCTCACATTATTGTATAAGGCAGAGATCATAGATGGTTATCTTGCTTGGGTGACGGGTGCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.884 |
94.521 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
55.839 |
93.836 |
0.524 |
| pilD | Acinetobacter nosocomialis M2 |
48.084 |
98.288 |
0.473 |
| pilD | Acinetobacter baumannii D1279779 |
48.084 |
98.288 |
0.473 |
| pilD | Neisseria gonorrhoeae MS11 |
47.407 |
92.466 |
0.438 |