Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | EGCR1_RS02450 | Genome accession | NZ_CP030932 |
| Coordinates | 514840..515118 (+) | Length | 92 a.a. |
| NCBI ID | WP_010781407.1 | Uniprot ID | - |
| Organism | Enterococcus gilvus strain CR1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 509840..520118
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGCR1_RS02425 (EGCR1_02425) | dat | 510353..511222 (+) | 870 | WP_114524064.1 | D-amino-acid transaminase | - |
| EGCR1_RS02430 (EGCR1_02430) | - | 511312..512094 (+) | 783 | WP_010781411.1 | phosphotransferase family protein | - |
| EGCR1_RS02435 (EGCR1_02435) | trmB | 512177..512827 (+) | 651 | WP_114524065.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| EGCR1_RS02440 (EGCR1_02440) | comGA | 512920..513870 (+) | 951 | WP_114525334.1 | competence type IV pilus ATPase ComGA | - |
| EGCR1_RS02445 (EGCR1_02445) | comGB | 513830..514843 (+) | 1014 | WP_114525335.1 | competence type IV pilus assembly protein ComGB | - |
| EGCR1_RS02450 (EGCR1_02450) | comYC | 514840..515118 (+) | 279 | WP_010781407.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EGCR1_RS02455 (EGCR1_02455) | comGD | 515090..515554 (+) | 465 | WP_240318393.1 | competence type IV pilus minor pilin ComGD | - |
| EGCR1_RS02460 (EGCR1_02460) | comGE | 515532..515813 (+) | 282 | WP_240318394.1 | competence type IV pilus minor pilin ComGE | - |
| EGCR1_RS02465 (EGCR1_02465) | comGF | 515800..516213 (+) | 414 | WP_010781404.1 | competence type IV pilus minor pilin ComGF | - |
| EGCR1_RS02470 (EGCR1_02470) | comGG | 516176..516526 (+) | 351 | WP_114524067.1 | competence type IV pilus minor pilin ComGG | - |
| EGCR1_RS02475 (EGCR1_02475) | - | 516693..517700 (+) | 1008 | WP_010781402.1 | class I SAM-dependent methyltransferase | - |
| EGCR1_RS02480 (EGCR1_02480) | - | 517748..518944 (+) | 1197 | WP_086305609.1 | acetate kinase | - |
| EGCR1_RS02490 (EGCR1_02490) | - | 519299..519826 (-) | 528 | WP_114524069.1 | CDP-alcohol phosphatidyltransferase family protein | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10621.50 Da Isoelectric Point: 9.3330
>NTDB_id=302507 EGCR1_RS02450 WP_010781407.1 514840..515118(+) (comYC) [Enterococcus gilvus strain CR1]
MKKKVSGFTLLEMLVVLFVISLLLLLFVPKLINQKESASKKSDAAIAKVVETQIQVYELDFGKTPTREELIDQEYVKKEQ
YDAYERAQKQPK
MKKKVSGFTLLEMLVVLFVISLLLLLFVPKLINQKESASKKSDAAIAKVVETQIQVYELDFGKTPTREELIDQEYVKKEQ
YDAYERAQKQPK
Nucleotide
Download Length: 279 bp
>NTDB_id=302507 EGCR1_RS02450 WP_010781407.1 514840..515118(+) (comYC) [Enterococcus gilvus strain CR1]
ATGAAAAAGAAAGTATCTGGGTTCACCTTATTAGAGATGTTGGTCGTACTTTTTGTAATCAGCCTGCTTTTATTATTATT
CGTGCCTAAACTAATTAATCAAAAAGAAAGCGCTAGTAAAAAAAGCGATGCAGCAATAGCAAAAGTAGTAGAAACACAAA
TTCAAGTGTATGAATTAGATTTTGGAAAGACACCCACAAGAGAAGAGTTAATCGATCAAGAATACGTCAAAAAGGAGCAG
TATGACGCGTATGAAAGAGCCCAAAAACAACCGAAATAA
ATGAAAAAGAAAGTATCTGGGTTCACCTTATTAGAGATGTTGGTCGTACTTTTTGTAATCAGCCTGCTTTTATTATTATT
CGTGCCTAAACTAATTAATCAAAAAGAAAGCGCTAGTAAAAAAAGCGATGCAGCAATAGCAAAAGTAGTAGAAACACAAA
TTCAAGTGTATGAATTAGATTTTGGAAAGACACCCACAAGAGAAGAGTTAATCGATCAAGAATACGTCAAAAAGGAGCAG
TATGACGCGTATGAAAGAGCCCAAAAACAACCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
52.326 |
93.478 |
0.489 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
45.652 |
100 |
0.457 |
| comGC/cglC | Streptococcus mitis SK321 |
48.81 |
91.304 |
0.446 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
49.398 |
90.217 |
0.446 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
47.059 |
92.391 |
0.435 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.988 |
90.217 |
0.424 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.988 |
90.217 |
0.424 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.988 |
90.217 |
0.424 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.988 |
90.217 |
0.424 |
| comYC | Streptococcus mutans UA140 |
44.444 |
88.043 |
0.391 |
| comYC | Streptococcus mutans UA159 |
44.444 |
88.043 |
0.391 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
43.21 |
88.043 |
0.38 |