Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   AVIN_RS09215 Genome accession   NC_012560
Coordinates   1995495..1995827 (+) Length   110 a.a.
NCBI ID   WP_012700623.1    Uniprot ID   C1DEM9
Organism   Azotobacter vinelandii DJ     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1990495..2000827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS09195 (Avin_20030) - 1990863..1991090 (+) 228 WP_012700619.1 hypothetical protein -
  AVIN_RS09200 (Avin_20040) acnA 1991087..1993774 (-) 2688 WP_012700620.1 aconitate hydratase AcnA -
  AVIN_RS09205 (Avin_20050) rlmM 1993952..1995013 (+) 1062 WP_012700621.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  AVIN_RS09210 (Avin_20060) tusA 1995066..1995323 (+) 258 WP_012700622.1 sulfurtransferase TusA -
  AVIN_RS09215 (Avin_20070) comE1/comEA 1995495..1995827 (+) 333 WP_012700623.1 helix-hairpin-helix domain-containing protein Machinery gene
  AVIN_RS09225 (Avin_20090) - 1996152..1997348 (-) 1197 WP_012700624.1 amino acid aminotransferase -
  AVIN_RS09230 (Avin_20100) uvrB 1997646..1999655 (+) 2010 WP_012700625.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11331.04 Da        Isoelectric Point: 8.6190

>NTDB_id=30243 AVIN_RS09215 WP_012700623.1 1995495..1995827(+) (comE1/comEA) [Azotobacter vinelandii DJ]
MRKNPFFTLLLALLASVSVAASAAEAPKTGGAKPATVQPAQPVATVKVDLNAADAATLERDLLGIGPAKAQAIVDYRQAH
GPFASVDELLEVKGIGAAILDKNRDRLSAN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=30243 AVIN_RS09215 WP_012700623.1 1995495..1995827(+) (comE1/comEA) [Azotobacter vinelandii DJ]
ATGCGCAAGAACCCGTTTTTCACCCTCCTGCTGGCTCTGCTGGCCAGCGTTTCCGTCGCCGCCTCGGCCGCGGAGGCGCC
CAAGACCGGGGGGGCCAAGCCCGCCACGGTCCAGCCTGCCCAGCCGGTTGCCACGGTCAAGGTCGATCTCAATGCCGCCG
ATGCGGCAACGCTCGAGCGCGACCTGCTGGGAATCGGCCCCGCCAAGGCCCAGGCCATCGTCGATTATCGTCAGGCCCAC
GGGCCTTTCGCATCGGTGGACGAACTGCTGGAGGTCAAGGGAATCGGTGCTGCGATACTGGACAAGAACCGCGATCGCTT
GAGCGCCAACTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(43-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

39.655

100

0.418
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

94.545

0.4
  comEA Vibrio cholerae strain A1552

39.623

96.364

0.382
  comEA Vibrio cholerae C6706

39.623

96.364

0.382
  comEA Vibrio parahaemolyticus RIMD 2210633

40.196

92.727

0.373
  comEA Vibrio campbellii strain DS40M4

39.216

92.727

0.364
  comEA Acinetobacter baumannii strain A118

31.25

100

0.364

Multiple sequence alignment