Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | SYNPCC7002_RS02480 | Genome accession | NC_010475 |
| Coordinates | 529911..531014 (+) | Length | 367 a.a. |
| NCBI ID | WP_012306132.1 | Uniprot ID | A0AAE8INR1 |
| Organism | Picosynechococcus sp. PCC 7002 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 524911..536014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNPCC7002_RS02450 (SYNPCC7002_A0495) | - | 525043..525393 (+) | 351 | WP_012306126.1 | DUF4870 domain-containing protein | - |
| SYNPCC7002_RS02455 (SYNPCC7002_A0496) | - | 525613..526416 (+) | 804 | WP_012306127.1 | response regulator transcription factor | - |
| SYNPCC7002_RS02460 (SYNPCC7002_A0497) | - | 526424..527155 (-) | 732 | WP_012306128.1 | ATP-binding cassette domain-containing protein | - |
| SYNPCC7002_RS02465 (SYNPCC7002_A0498) | - | 527187..527861 (-) | 675 | WP_012306129.1 | RibD family protein | - |
| SYNPCC7002_RS02470 (SYNPCC7002_A0499) | - | 527854..528297 (-) | 444 | WP_012306130.1 | DUF3531 family protein | - |
| SYNPCC7002_RS02475 (SYNPCC7002_A0500) | - | 528418..529698 (-) | 1281 | WP_012306131.1 | ABC transporter substrate-binding protein | - |
| SYNPCC7002_RS02480 (SYNPCC7002_A0501) | pilM | 529911..531014 (+) | 1104 | WP_012306132.1 | type IV pilus assembly protein PilM | Machinery gene |
| SYNPCC7002_RS02485 (SYNPCC7002_A0502) | - | 531019..531750 (+) | 732 | WP_012306133.1 | PilN domain-containing protein | - |
| SYNPCC7002_RS02490 (SYNPCC7002_A0503) | - | 531801..532607 (+) | 807 | WP_012306134.1 | hypothetical protein | - |
| SYNPCC7002_RS02495 (SYNPCC7002_A0504) | - | 532840..535206 (+) | 2367 | WP_012306135.1 | AMIN domain-containing protein | - |
| SYNPCC7002_RS02500 (SYNPCC7002_A0505) | - | 535286..535870 (+) | 585 | WP_012306136.1 | transposase | - |
Sequence
Protein
Download Length: 367 a.a. Molecular weight: 40571.64 Da Isoelectric Point: 4.2653
>NTDB_id=30243 SYNPCC7002_RS02480 WP_012306132.1 529911..531014(+) (pilM) [Picosynechococcus sp. PCC 7002]
MLDFFKNIFKPKRKGIGIEISTERLNIVQLKKQGQVYKLATYITEPVPEGIFEEGKIVDVPALAELIQNTLSANNISAKQ
VTAAVPMREAIIRLIPIPAELDDAELRDMVLNHEASLYLPYPREEVDLDYQKLGFFQDEDGIEKVQVLLVATRREVTDAY
VETIVQAGLEINILEINSFALLRTIREQLRQFSSQEAVVLVDIEFDCTEIAIVVDGVPQFSRTVPIGASQLQNALSRAMN
LPAPRDIELLQGMTIPNTPMEGARTGATGINPGMAALLRVLGELTDELRRSIDFYLNQSGELEVAQLMLAGPGGGISQLD
EFFTQRLSIPTIQIDPFEALSIDVDEEISKVQRPSLGTALGLGLREA
MLDFFKNIFKPKRKGIGIEISTERLNIVQLKKQGQVYKLATYITEPVPEGIFEEGKIVDVPALAELIQNTLSANNISAKQ
VTAAVPMREAIIRLIPIPAELDDAELRDMVLNHEASLYLPYPREEVDLDYQKLGFFQDEDGIEKVQVLLVATRREVTDAY
VETIVQAGLEINILEINSFALLRTIREQLRQFSSQEAVVLVDIEFDCTEIAIVVDGVPQFSRTVPIGASQLQNALSRAMN
LPAPRDIELLQGMTIPNTPMEGARTGATGINPGMAALLRVLGELTDELRRSIDFYLNQSGELEVAQLMLAGPGGGISQLD
EFFTQRLSIPTIQIDPFEALSIDVDEEISKVQRPSLGTALGLGLREA
Nucleotide
Download Length: 1104 bp
>NTDB_id=30243 SYNPCC7002_RS02480 WP_012306132.1 529911..531014(+) (pilM) [Picosynechococcus sp. PCC 7002]
ATGCTAGATTTTTTCAAAAATATCTTCAAACCAAAGCGTAAAGGGATTGGCATCGAGATCTCAACGGAACGCTTGAACAT
TGTCCAACTCAAAAAACAGGGACAGGTCTATAAGCTGGCAACCTACATCACCGAACCCGTACCCGAAGGCATTTTTGAAG
AAGGAAAAATTGTCGATGTTCCGGCCCTCGCCGAGCTGATCCAAAATACCCTCAGCGCCAACAACATCAGCGCCAAACAG
GTTACCGCCGCCGTGCCCATGCGGGAGGCCATTATTCGCCTGATCCCGATCCCCGCAGAACTCGATGATGCCGAACTGCG
GGATATGGTCCTCAACCACGAAGCGAGCCTCTATCTGCCCTACCCCCGCGAAGAAGTAGATCTCGATTACCAAAAGCTTG
GGTTTTTCCAAGATGAAGATGGCATTGAAAAGGTACAAGTCCTCTTGGTGGCCACCCGGCGGGAAGTGACCGACGCCTAT
GTGGAGACCATTGTCCAGGCGGGGCTAGAGATAAATATCCTCGAGATTAATAGTTTTGCCCTCCTCCGGACGATTCGCGA
GCAACTGCGGCAGTTTAGTTCCCAGGAAGCGGTGGTTTTAGTCGATATTGAGTTTGACTGTACCGAAATTGCCATTGTGG
TCGATGGGGTGCCGCAATTTTCCCGGACAGTGCCCATTGGTGCTTCACAATTGCAAAATGCCCTATCCCGCGCCATGAAT
TTACCTGCCCCCCGCGATATTGAACTTCTGCAGGGGATGACCATTCCCAACACACCGATGGAGGGAGCTCGTACTGGTGC
AACGGGCATTAATCCTGGGATGGCGGCCCTCCTGCGCGTTTTAGGTGAATTGACCGACGAACTGCGCCGTTCCATTGATT
TTTATCTCAACCAGAGTGGTGAGTTGGAAGTGGCCCAATTGATGTTAGCTGGCCCCGGTGGGGGGATTAGTCAACTGGAT
GAATTTTTTACGCAGCGTCTTAGCATTCCGACGATTCAAATTGATCCGTTTGAGGCGCTATCTATTGACGTTGATGAAGA
AATTTCCAAGGTGCAACGACCATCCTTGGGCACTGCACTGGGTTTAGGACTACGGGAGGCATAG
ATGCTAGATTTTTTCAAAAATATCTTCAAACCAAAGCGTAAAGGGATTGGCATCGAGATCTCAACGGAACGCTTGAACAT
TGTCCAACTCAAAAAACAGGGACAGGTCTATAAGCTGGCAACCTACATCACCGAACCCGTACCCGAAGGCATTTTTGAAG
AAGGAAAAATTGTCGATGTTCCGGCCCTCGCCGAGCTGATCCAAAATACCCTCAGCGCCAACAACATCAGCGCCAAACAG
GTTACCGCCGCCGTGCCCATGCGGGAGGCCATTATTCGCCTGATCCCGATCCCCGCAGAACTCGATGATGCCGAACTGCG
GGATATGGTCCTCAACCACGAAGCGAGCCTCTATCTGCCCTACCCCCGCGAAGAAGTAGATCTCGATTACCAAAAGCTTG
GGTTTTTCCAAGATGAAGATGGCATTGAAAAGGTACAAGTCCTCTTGGTGGCCACCCGGCGGGAAGTGACCGACGCCTAT
GTGGAGACCATTGTCCAGGCGGGGCTAGAGATAAATATCCTCGAGATTAATAGTTTTGCCCTCCTCCGGACGATTCGCGA
GCAACTGCGGCAGTTTAGTTCCCAGGAAGCGGTGGTTTTAGTCGATATTGAGTTTGACTGTACCGAAATTGCCATTGTGG
TCGATGGGGTGCCGCAATTTTCCCGGACAGTGCCCATTGGTGCTTCACAATTGCAAAATGCCCTATCCCGCGCCATGAAT
TTACCTGCCCCCCGCGATATTGAACTTCTGCAGGGGATGACCATTCCCAACACACCGATGGAGGGAGCTCGTACTGGTGC
AACGGGCATTAATCCTGGGATGGCGGCCCTCCTGCGCGTTTTAGGTGAATTGACCGACGAACTGCGCCGTTCCATTGATT
TTTATCTCAACCAGAGTGGTGAGTTGGAAGTGGCCCAATTGATGTTAGCTGGCCCCGGTGGGGGGATTAGTCAACTGGAT
GAATTTTTTACGCAGCGTCTTAGCATTCCGACGATTCAAATTGATCCGTTTGAGGCGCTATCTATTGACGTTGATGAAGA
AATTTCCAAGGTGCAACGACCATCCTTGGGCACTGCACTGGGTTTAGGACTACGGGAGGCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Synechocystis sp. PCC 6803 |
71.662 |
100 |
0.717 |